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 1. Double bag the specimen, now attached to the imaging fixture, using sterile technique and proceed to MRI and CT facilities.
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 1. Double bag the specimen, now attached to the imaging fixture, using sterile technique and proceed to MRI and CT facilities.
 1. Follow the anthropometric protocol established [[Specifications/InVivoTesting|here]].
  * This is done after the specimen is secured in the imaging fixture to create consistency between MRI/CT and manual anthropometric measurements.
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 1. Follow the anthropometric protocol established [[Specifications/InVivoTesting|here]].
  * This is done after the specimen is secured in the imaging fixture to create consistency between MRI/CT and manual anthropometric measurements.

PART I: Indentation

See Specifications/InVitroTesting/PartII for Part II: Surgery

Logistics

Part 1 - Indentation

Tuesday Schedule

Day 1

Day 2

Morning

Thaw Specimen

Anthropometric/MRI Prep 8-9:30

Mid

Thaw Specimen

CT & MRI 11-13

Afternoon

Thaw Specimen

Ultrasound

re-freeze

Thursday Schedule

Day 1

Day 2

Morning

Thaw Specimen

Anthropometric/MRI Prep 8-9:30

Mid

Thaw Specimen

CT & MRI 10-12

Afternoon

Thaw Specimen

Ultrasound

re-freeze

Target Outcome

  • Demographic documentation (age, gender)
  • Anthropometric measurements (body mass, height, extremity lengths and circumferences)
  • A set of MR and CT images of upper and lower leg.
  • Ultrasound images at unloaded state to extract tissue thickness for various extremity locations
  • Ultrasound imaging during indentation to extract tissue thickness for various extremity locations
  • Mechanical testing of tissue and tissue-interface to characterize mechanical properties at ultrasound indentation locations

Prerequisites

Specifications

Infrastructure

Protocols

Input

Cadaver upper and lower legs and arms of the same donor

Preparation

Supplies/Equipment needed for experimentation

  • Supplies: scalpel, forceps, 16 registration markers, Optotrak sensor (for specimen), Optotrak sensor (for ultrasound), 2 drills, drill bit+tap 8-32 (for registration markers), drill bit (pre-drill for screws), drill bit+tap (for Optotrak sensor plug), ultrasound gel, pens, washable markers, cloth tape measure, wash cloths
  • Equipment: Optotrak camera system, Optotrak probe, Ultrasound system with foot-switch, 14L5 probe, 9L4 probe, probe casings, load-transducer computer, load-transducer unit, ATI IFPS box, blue DAQ unit, beige DAQ unit, cadaver fixture

Specimen Preparation Imaging and Indentation

One specimen (e.g. Upper and Lower Leg) will be used at a time

Preparing Ultrasound

Refer to in vivo protocol

Procedures

Overview

  1. Thaw specimen per guidelines found here

  2. Remove tissue surrounding femoral head or humeral head to attach specimen to the imaging fixture and insert registration markers.
    • Note for the arm, the shoulder had to be dislocated and the arm separated.
  3. Secure specimen to imaging fixture in proper anatomical position, screwing humeral or femoral heads to the custom socket.
    • This must happen before registration marker insertion so they do not interfere with the imaging fixture.
  4. Insert registration markers. 12 (leg), 7 (arm)
    • Use the tap with the most available threads to avoid re threading when reversing
    • Ensure snug 'wiggle-free' fit of as many markers as possible
  5. Remove any metal for MRI and CT imaging.
  6. Double bag the specimen, now attached to the imaging fixture, using sterile technique and proceed to MRI and CT facilities.
  7. Attach Optotrak triaxial clusters as per the figure below.
    • Use smallest available drill bit for head regions due to softer bone otherwise screw will spin freely
    • Placement must be optimized to maintain constant view with cameras during procedures.
  8. Connect and configure all sensors and tools
    • Optotrak
      • Connect all sensors, establish connection and test visibility of all rigid-bodies
      • Digitize the following
        • all registration markers
        • instrumented ultrasound probe
        • imaging fixture
        • bone fiducial markers
    • Instrumented Ultrasound
      • Perform Weight compensation
  9. Complete anatomical and indentation trials using the same protocol found in the in vivo experimentation

  10. Follow the anthropometric protocol established here.

    • This is done after the specimen is secured in the imaging fixture to create consistency between MRI/CT and manual anthropometric measurements.

Anthropometric Measurements

Refer to in vivo protocol

Optotrak Marker Assembly on Bones

  • Mounting of Optotrak markers:
  • Leg

    1. Place the femur Optotrak marker on femur base plug
    2. Place the tibia Optotrak marker on tibia base plug
  • Arm

    1. Place the radius Optotrak marker on radius base plug
    2. Place the humerus Optotrak marker on humerus base plug

Acquisition of Registration Marker Locations and Anatomical Landmarks

Registration marker data collection

  • RegistrationOrder.png

  • ArmRegistrationOrder.png

    1. Keep specimen within Optotrak measurement view.
    2. Use the digitizing probe to record registration marker locations along with Optotrak marker position/orientation output, measured with respect to the global Optotrak coordinate system for each respective bone
    3. Ten points on each spherical marker should be digitized such that they are distributed evenly about the sphere surface
    4. The spheres should be digitized in the following order:

Leg

  1. Proximal Femur
    1. F1. Central
    2. F2. Lateral
    3. F3. Medial
  2. Distal Femur
    1. F4. Lateral epicondyle
    2. F5. Anterior
    3. F6. Medial epicondyle
  3. Proximal Tibia
    1. T1. Laterial tibial condyle
    2. T2. Tibial tuberosity
    3. T3. Medial tibial condyle
  4. Distal Tibia
    1. T4. Shaft
    2. T5. Distal anterior lateral surface
    3. T6. Medial malleolus

Arm

  1. Humerus
    1. H1. Anterior proximal head
    2. H2. Lateral proximal
    3. H3. Medial proximal
    4. H4. Later epicondyle
  2. Radius
    1. R1. Neck of radius
    2. R2. Lateral distal
    3. R3. Anterior lateral

Anatomical Landmark data collection

  1. Keep specimen within Optotrak measurement view.
  2. Use the digitizing probe to record anatomical landmark locations along with Optotrak marker position/orientation output, measured with respect to the global Optotrak coordinate system for each respective bone.
  3. The following anatomical landmarks will be collected:

Leg

  1. Femur
    1. Lateral Femoral Epicondyle
    2. Medial Femoral Epicondyle
    3. Femoral Head Point 1
    4. Femoral Head Point 2
    5. Femoral Head Point 3
    6. Femoral Head Point 4
  2. Tibia
    1. Lateral Tibial Plateau
    2. Medial Tibial Plateau
    3. Lateral Malleolus
    4. Lateral Malleolus (again)
    5. Medial Malleolus
    6. Medial Malleolus (again

Arm

  1. Humerus
    1. Lateral Epicondyle
    2. Medial Epicondyle
    3. Humeral Head Point
  2. Ulna
    1. Lateral Epicondyle
    2. Medial Epicondyle
    3. Ulnar Styloid

Note that the specifications dictate that all specimens should be from the right side. If the data collection software is used to collect data from a left specimen, the data file labels will be incorrect as right handed coordinate systems will be created for the left knee. The following chart describes the anatomical meaning for each segment.

Segment Coordinate system definition (Right and Left)

Upper/Lower Leg

Upper/Lower Arm

Left

Right

Left

Right

X

Medial

Medial

X

Posterior

Anterior

Y

Anterior

Posterior

Y

Superior

Superior

Z

Superior

Superior

Y

Lateral

Lateral

Ultrasound Indentation

Refer to in vivo wiki as it is the same protocol.

Optotrak Synchronization

A small time delay exists between Optotrak and force/orientation acquisition. An experiment was performed to quantify the delay.

  • Experiment

    • While the instrumented ultrasound was in view of optotrak, the probe was tapped with enough force to move the device so the movement and force could be viewed simultaneously.
    • Tap 4 times for 4 trials
    • Conduct experiment on 2 separate days
  • Results

    • Day 1: avg ~69ms +/- 7
    • Day 2: avg ~69ms +/- 9
  • The first time point collected in each Optotrak trial is within 10ms of the average time delay. Therefor by subtracting the first time point from the optotrak data we will consistently synchronize the force and position data to within 10ms.

Tissue Harvesting

At a later date, a region of tissue (skin fat muscle) will be excised from the indentation region of the thigh. This will be labeled and immediately frozen as is. Samples will be cut to size prior to mechanical testing.

Mechanical Testing

Need:

  • Skin and Muscle Punch (dumbbell)
  • Fat Punch (cylinder)

Preparation

Six equally sized samples will be collected from the indentation region. The region will be excised, then samples will be dissected.

  • Skin
    • 3 dumbbell strips at 45 degree orientation to each other using punch
  • Fat
    • 1 cylindrical sample
      • how will this be excised?

  • Muscle
    • 1 cylindrical sample along transverse axis
      • how will this be excised?
    • 1 dumbbell shaped sample
  • Equally sized samples will be collected from the various interfaces
    • Skin-fat
    • Skin-muscle
    • Muscle-muscle
    • Fat-muscle (if any)
  • 4 samples from each interface will be collected
    • Cylindrical shape across the interface
    • Strip across interface
    • Strip along interface (tensile test)
    • Strip along interface (shear test)

Testing

Tensile Testing

  • Samples to be tested
    • 3 dumbbell skin
    • 1 dumbbell muscle
    • Strip across interface (4 total)
    • Strip along interface (4 total)

Compression (unconfined)

  • Samples to be tested
    • Cylinder fat
    • Cylinder muscle ( + fascia) transverse axis
    • Cylinder samples across each interface (4 total)

Failure Tests

  • yield, ultimate strength, failure strain each tissue sample

Output

Execution of specifications. see InVitroExperiments

Preliminary Work

Specifications/InVitroTesting (last edited 2019-03-06 19:24:16 by owings)