A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

U

uminus() - Method in class Jama.Matrix

Unary minus

UncompressInputStream - Class in org.simtk.util

This class decompresses an input stream containing data compressed with the unix "compress" utility (LZC, a LZW variant).

UncompressInputStream(InputStream) - Constructor for class org.simtk.util.UncompressInputStream

UndoableDialog - Class in org.simtk.gui

UndoableDialog(Frame) - Constructor for class org.simtk.gui.UndoableDialog

UndoableDialog() - Constructor for class org.simtk.gui.UndoableDialog

UndoRedoMechanism - Class in org.simtk.gui

UndoRedoMechanism() - Constructor for class org.simtk.gui.UndoRedoMechanism

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.cartoon.AtomSphereActor

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.cartoon.BondStickCartoon

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.cartoon.WireFrameActor

unhighlightResidue(Residue) - Method in interface org.simtk.moleculargraphics.ResidueHighlightListener

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.SequenceCartoonCanvas

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.SequencePane

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.Tornado

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.Tornado3DCanvas

unhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.TornadoSequenceCanvas

unhighlightResidue(Residue) - Method in class org.simtk.toon.secstruct.SecondaryStructureCanvas

unhighlightResidueByAtomScalars(Residue) - Method in class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

unhighlightResidueByResidueScalars(Residue) - Method in class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

unhighlightResidues() - Method in class org.simtk.moleculargraphics.cartoon.ActorCartoonClass

unhighlightResidues() - Method in interface org.simtk.moleculargraphics.ResidueHighlightListener

unhighlightResidues() - Method in class org.simtk.moleculargraphics.SequenceCartoonCanvas

unhighlightResidues() - Method in class org.simtk.moleculargraphics.SequencePane

unhighlightResidues() - Method in class org.simtk.moleculargraphics.Tornado

unhighlightResidues() - Method in class org.simtk.moleculargraphics.Tornado3DCanvas

unhighlightResidues() - Method in class org.simtk.moleculargraphics.TornadoSequenceCanvas

unhighlightResidues() - Method in class org.simtk.toon.secstruct.SecondaryStructureCanvas

unit() - Method in interface org.simtk.geometry3d.MathVector

unit() - Method in class org.simtk.geometry3d.MathVectorClass

unit() - Method in interface org.simtk.geometry3d.Vector2D

unit() - Method in class org.simtk.geometry3d.Vector2DClass

unit() - Method in interface org.simtk.geometry3d.Vector3D

unit() - Method in class org.simtk.geometry3d.Vector3DClass

UNKNOWN_ELEMENT - Static variable in class org.simtk.molecularstructure.atom.ChemicalElementClass

UNKNOWN_RESIDUE_TYPE - Static variable in class org.simtk.molecularstructure.ResidueTypeClass

UnknownAminoAcid - Class in org.simtk.molecularstructure.protein

UnknownAminoAcid() - Constructor for class org.simtk.molecularstructure.protein.UnknownAminoAcid

UnknownObjectColorException - Exception in org.simtk.moleculargraphics.cartoon

UnknownObjectColorException() - Constructor for exception org.simtk.moleculargraphics.cartoon.UnknownObjectColorException

UNLIMITED - Static variable in class org.simtk.geometry3d.Angle.Range

UnLock() - Method in class org.simtk.moleculargraphics.PublicNativeVtkPanel

UnLock() - Method in class org.simtk.moleculargraphics.StructureCanvas

UnLock() - Method in class org.simtk.moleculargraphics.vtkSwingPanel

unSelect() - Method in interface org.simtk.util.SelectionListener

unSelect(Selectable) - Method in interface org.simtk.util.SelectionListener

unSetWait(String) - Method in class org.simtk.moleculargraphics.Tornado

UNSIGNED - Static variable in class org.simtk.geometry3d.Angle.Range

update(Graphics) - Method in class org.simtk.moleculargraphics.BufferedCanvas

update(Graphics) - Method in class org.simtk.moleculargraphics.SequenceCanvas

update(Observable, Object) - Method in class org.simtk.moleculargraphics.SequenceCanvas

update(Observable, Object) - Method in class org.simtk.moleculargraphics.StructureCanvas

update(Graphics) - Method in class org.simtk.moleculargraphics.vtkSwingPanel

update(Observable, Object) - Method in class org.simtk.pdb.MoleculeAcquisitionMethodDialog

update(Graphics) - Method in class org.simtk.splashscreen.SplashWindow

updateActors() - Method in interface org.simtk.moleculargraphics.cartoon.MoleculeCartoon

updateActors() - Method in class org.simtk.moleculargraphics.cartoon.MoleculeCartoonClass

updateAtomPosition(Atom) - Method in interface org.simtk.molecularstructure.Residue

updateAtomPosition(Atom) - Method in class org.simtk.molecularstructure.ResidueClass

updateAtomPositions(Collection<Atom>) - Method in class org.simtk.moleculargraphics.cartoon.CappedBondActor

Proposed interface for updating cartoon conformation.

updateCoordinates() - Method in class org.simtk.moleculargraphics.cartoon.DuplexCylinderCartoon

updateCoordinates() - Method in class org.simtk.moleculargraphics.cartoon.ProteinRibbon

updateFromWidth() - Method in class org.simtk.moleculargraphics.cartoon.vtkArrowWidthFilter

updateFromWidth() - Method in class org.simtk.moleculargraphics.cartoon.vtkTaperedWidthFilter

UpdateLight() - Method in class org.simtk.moleculargraphics.vtkSwingPanel

updateScaleBar(vtkCamera) - Method in class org.simtk.moleculargraphics.ScaleBar

updateState() - Method in interface org.simtk.gui.ProgressDialog

updateState() - Method in class org.simtk.gui.ProgressDialogClass

updateState() - Method in class org.simtk.gui.ProgressPanel

updateTitleBar() - Method in class org.simtk.moleculargraphics.Tornado

Uridylate - Class in org.simtk.molecularstructure.nucleicacid

Uridylate() - Constructor for class org.simtk.molecularstructure.nucleicacid.Uridylate

url - Variable in class org.simtk.pdb.LoadPdbUrlProcess

userAppName - Variable in class org.simtk.moleculargraphics.EthaneDemo

userIsInteracting - Variable in class org.simtk.moleculargraphics.Tornado

useScaleBar - Variable in class org.simtk.moleculargraphics.StructureCanvas