A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

L

label - Variable in class org.simtk.toon.secstruct.NumberTick

labelDirection - Variable in class org.simtk.toon.secstruct.NumberTick

lastX - Variable in class org.simtk.moleculargraphics.vtkSwingPanel

lastY - Variable in class org.simtk.moleculargraphics.vtkSwingPanel

LAVENDER - Static variable in class org.simtk.util.ColorName

LAVENDER_BLUSH - Static variable in class org.simtk.util.ColorName

LAVENDER_BLUSH1 - Static variable in class org.simtk.util.ColorName

LAVENDER_BLUSH2 - Static variable in class org.simtk.util.ColorName

LAVENDER_BLUSH3 - Static variable in class org.simtk.util.ColorName

LAVENDER_BLUSH4 - Static variable in class org.simtk.util.ColorName

LAWN_GREEN - Static variable in class org.simtk.util.ColorName

LEFT_HANDED_ALPHA - Static variable in class org.simtk.molecularstructure.protein.Helix

LEFT_HANDED_GAMMA - Static variable in class org.simtk.molecularstructure.protein.Helix

LEFT_HANDED_OMEGA - Static variable in class org.simtk.molecularstructure.protein.Helix

LEMON_CHIFFON - Static variable in class org.simtk.util.ColorName

LEMON_CHIFFON1 - Static variable in class org.simtk.util.ColorName

LEMON_CHIFFON2 - Static variable in class org.simtk.util.ColorName

LEMON_CHIFFON3 - Static variable in class org.simtk.util.ColorName

LEMON_CHIFFON4 - Static variable in class org.simtk.util.ColorName

length() - Method in interface org.simtk.geometry3d.MathVector

length() - Method in class org.simtk.geometry3d.MathVectorClass

lengthResolution - Variable in class org.simtk.moleculargraphics.cartoon.BetaStrandRibbon

lengthResolution - Variable in class org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment

lengthSquared() - Method in interface org.simtk.geometry3d.MathVector

lengthSquared() - Method in class org.simtk.geometry3d.MathVectorClass

Leucine - Class in org.simtk.molecularstructure.protein

Leucine() - Constructor for class org.simtk.molecularstructure.protein.Leucine

lgt - Variable in class org.simtk.moleculargraphics.vtkSwingPanel

LIGHT_BLUE - Static variable in class org.simtk.util.ColorName

LIGHT_BLUE1 - Static variable in class org.simtk.util.ColorName

LIGHT_BLUE2 - Static variable in class org.simtk.util.ColorName

LIGHT_BLUE3 - Static variable in class org.simtk.util.ColorName

LIGHT_BLUE4 - Static variable in class org.simtk.util.ColorName

LIGHT_CORAL - Static variable in class org.simtk.util.ColorName

LIGHT_CYAN - Static variable in class org.simtk.util.ColorName

LIGHT_CYAN1 - Static variable in class org.simtk.util.ColorName

LIGHT_CYAN2 - Static variable in class org.simtk.util.ColorName

LIGHT_CYAN3 - Static variable in class org.simtk.util.ColorName

LIGHT_CYAN4 - Static variable in class org.simtk.util.ColorName

LIGHT_GOLDENROD - Static variable in class org.simtk.util.ColorName

LIGHT_GOLDENROD1 - Static variable in class org.simtk.util.ColorName

LIGHT_GOLDENROD2 - Static variable in class org.simtk.util.ColorName

LIGHT_GOLDENROD3 - Static variable in class org.simtk.util.ColorName

LIGHT_GOLDENROD4 - Static variable in class org.simtk.util.ColorName

LIGHT_GOLDENROD_YELLOW - Static variable in class org.simtk.util.ColorName

LIGHT_GRAY - Static variable in class org.simtk.util.ColorName

LIGHT_GREEN - Static variable in class org.simtk.util.ColorName

LIGHT_GREY - Static variable in class org.simtk.util.ColorName

LIGHT_PINK - Static variable in class org.simtk.util.ColorName

LIGHT_PINK1 - Static variable in class org.simtk.util.ColorName

LIGHT_PINK2 - Static variable in class org.simtk.util.ColorName

LIGHT_PINK3 - Static variable in class org.simtk.util.ColorName

LIGHT_PINK4 - Static variable in class org.simtk.util.ColorName

LIGHT_SALMON - Static variable in class org.simtk.util.ColorName

LIGHT_SALMON1 - Static variable in class org.simtk.util.ColorName

LIGHT_SALMON2 - Static variable in class org.simtk.util.ColorName

LIGHT_SALMON3 - Static variable in class org.simtk.util.ColorName

LIGHT_SALMON4 - Static variable in class org.simtk.util.ColorName

LIGHT_SEA_GREEN - Static variable in class org.simtk.util.ColorName

LIGHT_SKY_BLUE - Static variable in class org.simtk.util.ColorName

LIGHT_SKY_BLUE1 - Static variable in class org.simtk.util.ColorName

LIGHT_SKY_BLUE2 - Static variable in class org.simtk.util.ColorName

LIGHT_SKY_BLUE3 - Static variable in class org.simtk.util.ColorName

LIGHT_SKY_BLUE4 - Static variable in class org.simtk.util.ColorName

LIGHT_SLATE_BLUE - Static variable in class org.simtk.util.ColorName

LIGHT_SLATE_GRAY - Static variable in class org.simtk.util.ColorName

LIGHT_SLATE_GREY - Static variable in class org.simtk.util.ColorName

LIGHT_STEEL_BLUE - Static variable in class org.simtk.util.ColorName

LIGHT_STEEL_BLUE1 - Static variable in class org.simtk.util.ColorName

LIGHT_STEEL_BLUE2 - Static variable in class org.simtk.util.ColorName

LIGHT_STEEL_BLUE3 - Static variable in class org.simtk.util.ColorName

LIGHT_STEEL_BLUE4 - Static variable in class org.simtk.util.ColorName

LIGHT_YELLOW - Static variable in class org.simtk.util.ColorName

LIGHT_YELLOW1 - Static variable in class org.simtk.util.ColorName

LIGHT_YELLOW2 - Static variable in class org.simtk.util.ColorName

LIGHT_YELLOW3 - Static variable in class org.simtk.util.ColorName

LIGHT_YELLOW4 - Static variable in class org.simtk.util.ColorName

LightFollowCamera - Variable in class org.simtk.moleculargraphics.vtkSwingPanel

LightFollowCameraOff() - Method in class org.simtk.moleculargraphics.vtkSwingPanel

LightFollowCameraOn() - Method in class org.simtk.moleculargraphics.vtkSwingPanel

lightingset - Variable in class org.simtk.moleculargraphics.vtkSwingPanel

LIME - Static variable in class org.simtk.util.ColorName

LIME_GREEN - Static variable in class org.simtk.util.ColorName

Line3D - Class in org.simtk.geometry3d

Line3D() - Constructor for class org.simtk.geometry3d.Line3D

Line3D(Vector3D, Vector3D) - Constructor for class org.simtk.geometry3d.Line3D

LineCommand - Interface in org.simtk.util

LINEN - Static variable in class org.simtk.util.ColorName

listeners - Variable in class org.simtk.moleculargraphics.ActiveMoleculeBroadcaster

listeners - Variable in class org.simtk.moleculargraphics.ResidueCenterBroadcaster

listeners - Variable in class org.simtk.moleculargraphics.ResidueHighlightBroadcaster

listeners - Variable in class org.simtk.util.SelectionBroadcaster

LITHIUM - Static variable in class org.simtk.molecularstructure.atom.ChemicalElementClass

load() - Static method in class org.simtk.moleculargraphics.VTKLibraries

loadMolecules() - Method in class org.simtk.pdb.LoadPdbUrlProcess

loadPDBFormat(String) - Method in class org.simtk.molecularstructure.MoleculeCollection

loadPDBFormat(URL) - Method in class org.simtk.molecularstructure.MoleculeCollection

loadPDBFormat(InputStream) - Method in class org.simtk.molecularstructure.MoleculeCollection

LoadPdbUrlProcess - Class in org.simtk.pdb

LoadPdbUrlProcess(URL, SimpleObservable) - Constructor for class org.simtk.pdb.LoadPdbUrlProcess

loadSStructViewFile(InputStream) - Method in class org.simtk.toon.secstruct.SecondaryStructureCanvas

LocatedProtein - Interface in org.simtk.molecularstructure.protein

Location - Interface in org.simtk.geometry3d

Lock() - Method in class org.simtk.moleculargraphics.PublicNativeVtkPanel

Lock() - Method in class org.simtk.moleculargraphics.StructureCanvas

Lock() - Method in class org.simtk.moleculargraphics.vtkSwingPanel

longValue() - Method in class org.simtk.geometry3d.Angle

lu() - Method in class Jama.Matrix

LU Decomposition

lubricateUserInteraction() - Method in class org.simtk.moleculargraphics.SequencePane

lubricateUserInteraction() - Method in class org.simtk.moleculargraphics.Tornado

lubricateUserInteraction() - Method in class org.simtk.moleculargraphics.TornadoSequenceCanvas

LUDecomposition - Class in Jama

LU Decomposition.

LUDecomposition(Matrix) - Constructor for class Jama.LUDecomposition

LU Decomposition

lut - Variable in class org.simtk.moleculargraphics.cartoon.ToonColors

Lysine - Class in org.simtk.molecularstructure.protein

Lysine() - Constructor for class org.simtk.molecularstructure.protein.Lysine