A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

F

fileLoadObservable - Variable in class org.simtk.pdb.MoleculeAcquisitionMethodDialog

FileNameFilter - Class in org.simtk.pdb

findWorstPseudoknotBasePairs(Set<BasePair>) - Static method in class org.simtk.toon.secstruct.SecondaryStructureDiagramClass

Identify a set of base pairs, which, if removed, leaves a set that has no pseudoknots and no bases with multiple base pairs.

FineRibbonCartoon - Class in org.simtk.moleculargraphics.cartoon

FineRibbonCartoon() - Constructor for class org.simtk.moleculargraphics.cartoon.FineRibbonCartoon

finishVtkPipeline(vtkPolyData) - Method in class org.simtk.moleculargraphics.cartoon.ProteinRibbonSegment

FIREBRICK - Static variable in class org.simtk.util.ColorName

FIREBRICK1 - Static variable in class org.simtk.util.ColorName

FIREBRICK2 - Static variable in class org.simtk.util.ColorName

FIREBRICK3 - Static variable in class org.simtk.util.ColorName

FIREBRICK4 - Static variable in class org.simtk.util.ColorName

fireCenter(Residue) - Method in class org.simtk.moleculargraphics.ResidueCenterBroadcaster

fireHighlight(Residue) - Method in class org.simtk.moleculargraphics.ResidueHighlightBroadcaster

fireSelect(Selectable) - Method in class org.simtk.util.SelectionBroadcaster

fireSetActiveMolecle(Molecule) - Method in class org.simtk.moleculargraphics.ActiveMoleculeBroadcaster

fireUnhighlightResidue(Residue) - Method in class org.simtk.moleculargraphics.ResidueHighlightBroadcaster

fireUnhighlightResidues() - Method in class org.simtk.moleculargraphics.ResidueHighlightBroadcaster

fireUnSelect() - Method in class org.simtk.util.SelectionBroadcaster

fireUnSelect(Selectable) - Method in class org.simtk.util.SelectionBroadcaster

fixedWidthDoubletoString(double, int, int) - Static method in class Jama.examples.MagicSquareExample

Format double with Fw.d.

fixedWidthIntegertoString(int, int) - Static method in class Jama.examples.MagicSquareExample

Format integer with Iw.

floatValue() - Method in class org.simtk.geometry3d.Angle

FLORAL_WHITE - Static variable in class org.simtk.util.ColorName

FLUORINE - Static variable in class org.simtk.molecularstructure.atom.ChemicalElementClass

flushUserIsInteracting() - Method in class org.simtk.moleculargraphics.Tornado

font - Variable in class org.simtk.moleculargraphics.SequenceCanvas

fontHeights - Variable in class org.simtk.toon.secstruct.SecondaryStructureCanvas

fonts - Variable in class org.simtk.toon.secstruct.SecondaryStructureCanvas

fontWidths - Variable in class org.simtk.toon.secstruct.SecondaryStructureCanvas

FOREST_GREEN - Static variable in class org.simtk.util.ColorName

FUCHSIA - Static variable in class org.simtk.util.ColorName

FunctionalGroup - Class in org.simtk.molecularstructure

FunctionalGroup(String[]) - Constructor for class org.simtk.molecularstructure.FunctionalGroup