A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

O

ObservableInterface - Interface in org.simtk.mvc

OLD_LACE - Static variable in class org.simtk.util.ColorName

oldCreateAlphaHelix(List<Residue>, double, double) - Method in class org.simtk.moleculargraphics.cartoon.ProteinHelix

oldCreateBetaStrand(List<Residue>, double, double, int, Spline3D, Spline3D) - Method in class org.simtk.moleculargraphics.cartoon.BetaStrandRibbon

oldCreateCoil(List<Residue>, double) - Method in class org.simtk.moleculargraphics.cartoon.ProteinCoil

OLIVE - Static variable in class org.simtk.util.ColorName

OLIVE_DRAB - Static variable in class org.simtk.util.ColorName

OLIVE_DRAB1 - Static variable in class org.simtk.util.ColorName

OLIVE_DRAB2 - Static variable in class org.simtk.util.ColorName

OLIVE_DRAB3 - Static variable in class org.simtk.util.ColorName

OLIVE_DRAB4 - Static variable in class org.simtk.util.ColorName

oneLetterCode - Variable in class org.simtk.molecularstructure.ResidueTypeClass

ORANGE - Static variable in class org.simtk.util.ColorName

ORANGE1 - Static variable in class org.simtk.util.ColorName

ORANGE2 - Static variable in class org.simtk.util.ColorName

ORANGE3 - Static variable in class org.simtk.util.ColorName

ORANGE4 - Static variable in class org.simtk.util.ColorName

ORANGE_RED - Static variable in class org.simtk.util.ColorName

ORANGE_RED1 - Static variable in class org.simtk.util.ColorName

ORANGE_RED2 - Static variable in class org.simtk.util.ColorName

ORANGE_RED3 - Static variable in class org.simtk.util.ColorName

ORANGE_RED4 - Static variable in class org.simtk.util.ColorName

ORCHID - Static variable in class org.simtk.util.ColorName

ORCHID1 - Static variable in class org.simtk.util.ColorName

ORCHID2 - Static variable in class org.simtk.util.ColorName

ORCHID3 - Static variable in class org.simtk.util.ColorName

ORCHID4 - Static variable in class org.simtk.util.ColorName

org.simtk.geometry3d - package org.simtk.geometry3d

org.simtk.gui - package org.simtk.gui

org.simtk.moleculargraphics - package org.simtk.moleculargraphics

org.simtk.moleculargraphics.cartoon - package org.simtk.moleculargraphics.cartoon

org.simtk.molecularstructure - package org.simtk.molecularstructure

org.simtk.molecularstructure.atom - package org.simtk.molecularstructure.atom

org.simtk.molecularstructure.nucleicacid - package org.simtk.molecularstructure.nucleicacid

org.simtk.molecularstructure.protein - package org.simtk.molecularstructure.protein

org.simtk.mvc - package org.simtk.mvc

org.simtk.pdb - package org.simtk.pdb

org.simtk.rnaml - package org.simtk.rnaml

org.simtk.splashscreen - package org.simtk.splashscreen

org.simtk.toon.secstruct - package org.simtk.toon.secstruct

org.simtk.util - package org.simtk.util

orientByNormal() - Method in class org.simtk.moleculargraphics.cartoon.GlyphCartoon

orientByNormal() - Method in class org.simtk.moleculargraphics.cartoon.TensorGlyphCartoon

origin - Variable in class org.simtk.geometry3d.Line3D

outputter - Variable in class org.simtk.rnaml.RnamlExportDocument

OXYGEN - Static variable in class org.simtk.molecularstructure.atom.ChemicalElementClass