Trending Projects
Simbody: Multibody Physics API
Simbody is useful for internal coordinate andcoarse grained molecule modeling, large scale
mechanical models like skeletons, and anything
else that can be modeled as bodies interconnected
by joints, acted upon by forces, and restricted by
constraints.
Downloads last week: 58
OpenMM Zephyr
OpenMM Zephyr provides a visual application forrunning GPU-accelerated molecular simulations.
Downloads last week: 187
Total downloads: 1,100,848
Reproducibility in simulation-based prediction of natural knee mechanics
This project aims for understanding the influenceof modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 77
Total downloads: 24,565
Matlab-Opensim Interfaces
Provides tools for using different aspects ofOpensim within the Matlab environment, including
command line pipelines as well as accessing the
Opensim API directly. The main functionality
has now been included as part of Opensim 3.0 with
improved functionality (and will become more
obsolete with Opensim 4.0). Please see the
developer wiki for more information. Therefore
this is being kept only as an archive, and users
should see the documentation on interfacing Matlab
with Opensim on the Opensim website
(http://simtk-confluence.stanford.edu:8080/display
/OpenSim/Scripting+with+Matlab). As such the
forums etc will not be monitored.
Total followers: 26
Total downloads: 9,167
SCONE: Open Source Software for Predictive Simulation
<imgsrc="https://scone.software/scone_window.png&
quot; alt="SCONE">SCONE is free and
open-source software for <b>predictive
simulation</b> of human and animal
motion. With SCONE, you can define and optimize
<b>neuromuscular controllers</b> to
optimally perform a specific task, according to
<b>high-level objectives</b> such as
walking speed and energy efficiency. Please
visit the <a
href="https://scone.software">SCONE
homepage</a> for more information, or check
<a
href="https://scone.software/doku.php?id=chan
ges">what's new</a> in the latest
version.
Downloads last week: 29
Forum posts last week: 11
Total followers: 33
Full Body Model for use in Dynamic Simulations of Human Gait
Full body musculoskeletal model withmuscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Total followers: 35
Total downloads: 12,612
Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)
Provides an easy to use toolbox, compatible withOpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 41
MRA analysis of mice Vasculature
I would like to measure the capillary vesselradius and density of mice MRA images for
longitudinal study. Especially the small
capillaries in cortex region of brain.
Forum posts last week: 1
AddBiomechanics
Upload marker trajectories and ground reactionforces and get an optimally scaled OpenSim model,
inverse kinematics, and inverse dynamics results
back in minutes. Share your data with the
community. Browse and download biomechanics data.
Hosted by Stanford University. Available at
https://addbiomechanics.org
Forum posts last week: 4
Thoracolumbar spine and rib cage model in OpenSim
The aim of this project is to provide detailed andwell-validated musculoskeletal models of the
thoracolumbar spine and rib cage, particularly for
investigators with an interest studying
musculoskeletal loading in the trunk.
Total followers: 39
Snorkel
Snorkel is an open-source system that generatestraining data for information extraction systems,
also known as predictive systems.
Downloads last week: 168
Total downloads: 41,127
Data for simulations of ArkA peptide binding to Abp1p SH3 domain
Protein-protein interactions are involved in awide range of cellular processes. These
interactions often involve intrinsically
disordered proteins (IDPs) and protein binding
domains. However, the details of IDP binding
pathways are hard to characterize u
Forum posts last week: 1
OpenArm: Volumetric & Time Series Models of Muscle Deformation
The OpenArm data sets are designed to enable studyof force- and kinematic-induced muscle deformation
for applications in biomechanics research,
computer graphics, and assistive device
development. **NEW:** The OpenArm Multisensor
2.0 data set contains new time series of
ultrasound-measured brachioradialis deformation,
surface electromyography (sEMG)-measured
activation, force, and goal trajectory data, for
various force-, deformation-, and activation-based
trajectory tracking tasks, under refined
conditions from those of the 1.0 data set. Also
included are all analysis, real-time muscle
deformation tracking, and display code. The
OpenArm Multisensor 1.0 data set contains time
series cross-sectional ultrasound scans of the
brachioradialis muscle under variable elbow
loading, alongside corresponding surface
electromyography (sEMG), acoustic myography (AMG),
and force data. The OpenArm 1.0 and 2.0 data
sets encompass factorial sets of volumetric scans
of the arm, generated using ultrasound and motion
capture, that allow for analysis of both force-
and configuration-associated muscle deformation.
Downloads last week: 68
Total downloads: 13,402
Closed loop simulation of a human-exoskeleton and kinetic and kinematic modeling
This project attempts to tackle some of thechallenges in developing an exoskeleton device
using simulation methods. in this project, the
closed loop simulation of a human exoskeleton is
performed .In this study, a simulation-based
method is presented for the designing and analysis
of the parameters of an exoskeleton and its
wearer’s kinetics and kinematics. Model-based
design software, including OpenSim and Inventor,
and mathematical software, such as MATLAB, are
integrated. This method can assist in the
modification of exoskeleton devices and allow
physiologists, and physical therapists to
generate new solutions for rehabilitation programs
using exoskeletons.
Downloads last week: 43
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Biological applications