Trending Projects
OpenMM
OpenMM includes everything one needs to run modernmolecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 1,671
Total followers: 66
Total downloads: 817,569
Full Body Model for use in Dynamic Simulations of Human Gait
Full body musculoskeletal model withmuscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Total followers: 35
Total downloads: 13,306
Open Knee(s): Virtual Biomechanical Representations of the Knee Joint
Open Knee(s) goals have been to provide freeaccess to three-dimensional finite element
representations of the knee joint and promote open
development of knee models for collaborative
testing and use. <B>Definitive Guide to
Project and Its Outcomes</B> Open Knee(s): A
Free and Open Source Library of Specimen-Specific
Models and Related Digital Assets for Finite
Element Analysis of the Knee Joint. Chokhandre S,
Schwartz A, Klonowski E, Landis B, Erdemir A. Ann
Biomed Eng. 2023 Jan;51(1):10-23. (<A
HREF="https://doi.org/10.1007/s10439-022-0307
4-0">https://doi.org/10.1007/s10439-022-03
074-0</A>) <B>Definitive Guide to
Open Knee(s) Data</B> Specimen specific
imaging and joint mechanical testing data for next
generation virtual knees. Chokhandre S, Neumann
EE, Nagle TF, Colbrunn RW, Flask CA, Colak C,
Halloran J, Erdemir A. Data Brief. 2021 Jan
30;35:106824. (<A
HREF="https://doi.org/10.1016/j.dib.2021.1068
24">https://doi.org/10.1016/j.dib.2021.106
824</A>) <B>Database of Open
Knee(s) Models</B> Under Downloads ->
Data Share -> View -> OKS_models and at
(<A
HREF="https://doi.org/10.18735/b0zv-n395"
;>https://doi.org/10.18735/b0zv-n395</A>)
<B>Database of Open Knee(s)
Data</B> Growing version under Downloads
-> Data Share -> View -> Open Knees Data;
permanent static version at (<A
HREF="https://doi.org/10.18735/4e78-1311"
;>https://doi.org/10.18735/4e78-1311</A>)
Downloads last week: 285
Total followers: 47
Total downloads: 144,371
Whole-Cell Computational Model of Mycoplasma genitalium
This project provides all code and data for thefirst "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 3,390
Total downloads: 269,662
Neuromusculoskeletal Modeling (NMSM) Pipeline
Facilitate development of personalized models andresearch in treatment design for the biomechanics
community.
Downloads last week: 47
New download files: 1
Practical Annotation and Exchange of Virtual Anatomy
This site serves for dissemination of aeva and itsuse cases. aeva is a free and open source software
for annotation and exchange of virtual anatomy.
The use cases drive design and testing of aeva
features and demonstrate various workflows that
rely on virtual anatomy.
Downloads last week: 46
SCONE: Open Source Software for Predictive Simulation
<imgsrc="https://scone.software/scone_window.png&
quot; alt="SCONE">SCONE is free and
open-source software for <b>predictive
simulation</b> of human and animal
motion. With SCONE, you can define and optimize
<b>neuromuscular controllers</b> to
optimally perform a specific task, according to
<b>high-level objectives</b> such as
walking speed and energy efficiency. Please
visit the <a
href="https://scone.software">SCONE
homepage</a> for more information, or check
<a
href="https://scone.software/doku.php?id=chan
ges">what's new</a> in the latest
version.
Forum posts last week: 15
Total followers: 34
SimVascular: Examples and Clinical Cases
Download examples and clinical case files forcardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 58
Total downloads: 14,376
Reproducibility in simulation-based prediction of natural knee mechanics
This project aims for understanding the influenceof modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 114
New followers: 1
Total downloads: 26,948
Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)
Provides an easy to use toolbox, compatible withOpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 41
MITK-GEM: Software pipeline to GEnerate Models from images
Provides a image analysis application with GUI togenerate finite element models from medical
images.
Downloads last week: 61
OpenMM Zephyr
OpenMM Zephyr provides a visual application forrunning GPU-accelerated molecular simulations.
Downloads last week: 1,068
Total downloads: 1,110,003
Grand Challenge Competition to Design Stroke Neurorehabilitation Treatments
Provide comprehensive data sets with associatedmodels (scaled generic and personalized) that will
enable researchers to design personalized stroke
neurorehabilitation treatments.
New download files: 10
By Category
Biological applications
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Jobs
PhD Position in Neuromusculoskeletal Modeling
Rice Computational Neuromechanics Lab
Jul 20, 2024
Jul 20, 2024
The Rice Computational Neuromechanics Lab directed by B.J. Fregly is seeking to hire a new PhD student with the appointment beginning as soon as possible.