Thoracolumbar spine and rib cage model in OpenSim

The aim of this project is to provide detailed and
well-validated musculoskeletal models of the
thoracolumbar spine and rib cage, particularly for
investigators with an interest studying
musculoskeletal loading in the trunk.
Total followers: 39

SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 49
Total downloads: 15,179

OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 5,209
Forum posts last week: 3
Total followers: 66
Total downloads: 852,785

Reproducibility in simulation­-based prediction of natural knee mechanics

This project aims for understanding the influence
of modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 128
Total downloads: 28,431

Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Total followers: 45

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 2,037
Total downloads: 300,670

Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 168
Total downloads: 47,682

Practical Annotation and Exchange of Virtual Anatomy

This site serves for dissemination of aeva and its
use cases. aeva is a free and open source software
for annotation and exchange of virtual anatomy.
The use cases drive design and testing of aeva
features and demonstrate various workflows that
rely on virtual anatomy.
Downloads last week: 68

2007BioE15 Bruns

Submit materials for class
Total followers: 79

SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 121
Forum posts last week: 4
Total followers: 80
Total downloads: 51,084

Marker registration method informed by anatomical reference frame orientations

A systematic method for marker registration,
informed by anatomical reference frame
orientations, reduces subjective user input and
can make marker registration more accurate and
repeatable
New followers: 1

OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 3,196
Total downloads: 1,209,390

SimTK Website

Provide updates about the SimTK website and
support its users
Forum posts last week: 1

Model of the Scapulothoracic Joint

Provide an OpenSim Joint model that enables a more
accurate representation of scapula mechanics in
musculoskeletal simulations.
Total followers: 30

Dynamic Arm Simulator

Provides a real-time, dynamic simulation of arm
movement.
Total followers: 39