SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 123
Forum posts last week: 3
Total followers: 80
Total downloads: 52,119

Control and simulate forward dynamics of muscle-driven models using OpenSim

Advanced simulation tools for analysing
muscle-driven dynamics using OpenSim. Focuses on
developing control strategies to enhance
biomechanical studies and rehabilitation
technologies.
New download files: 1
New members: 1

Upper Extremity Dynamic Model

Provides the files associated with a dynamic model
of the upper limb for use in SIMM or OpenSim.
Total followers: 45

OpenRobotRehab: Data Sets & Platforms for Robot-Mediated Rehabilitation

The OpenRobotRehab data sets and open-source
software platforms are designed to enable study of
human neuromechanical behavior when modified by
rehabilitative robots. **NEW:** The
OpenRobotRehab 1.0 release contains time-series
data from 13 healthy and 2 post-stroke
participants performing isometric upper-limb
rehabilitation gaming tasks, including raw and
processed surface electromyography (sEMG), force
torque, and game performance data, alongside
analysis code and protocol details.
New download files: 2

Grand Challenge Competition to Predict In Vivo Knee Loads

Provide a comprehensive data set with associated
models that will enable researchers to validate
musculoskeletal model estimates of muscle and
joint contact forces in the knee.
Downloads last week: 29
Total downloads: 28,303

OpenArm: Volumetric & Time Series Models of Muscle Deformation

The OpenArm data sets are designed to enable study
of force- and kinematic-induced muscle deformation
for applications in biomechanics research,
computer graphics, and assistive device
development. **NEW:** The OpenArm Multisensor
2.0 data set contains new time series of
ultrasound-measured brachioradialis deformation,
surface electromyography (sEMG)-measured
activation, force, and goal trajectory data, for
various force-, deformation-, and activation-based
trajectory tracking tasks, under refined
conditions from those of the 1.0 data set. Also
included are all analysis, real-time muscle
deformation tracking, and display code. The
OpenArm Multisensor 1.0 data set contains time
series cross-sectional ultrasound scans of the
brachioradialis muscle under variable elbow
loading, alongside corresponding surface
electromyography (sEMG), acoustic myography (AMG),
and force data. The OpenArm 1.0 and 2.0 data
sets encompass factorial sets of volumetric scans
of the arm, generated using ultrasound and motion
capture, that allow for analysis of both force-
and configuration-associated muscle deformation.
New followers: 1
Total downloads: 16,409

OpenMM

OpenMM has moved to https://openmm.org. This site
is no longer used.
Downloads last week: 797
Total followers: 66
Total downloads: 868,206

Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 56
Total downloads: 48,338

Reproducibility in simulation­-based prediction of natural knee mechanics

This project aims for understanding the influence
of modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 33
Total downloads: 29,107

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 1,722
Total downloads: 315,515

OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,320
Forum posts last week: 12
Total followers: 319
New followers: 1
Total downloads: 837,364

Simulations of Crouch Gait

Simulations of individuals with cerebral palsy
who walk in a crouch gait . These simulations
were used in analyses of (1) contributions to mass
center accelerations, (2) impacts of muscle
weakness, (3) magnitudes of tibiofemoral contact
forces, and (4) evaluations of ankle foot orthoses
during crouch gait. Downloads provide all
supporting files for OpenSim simulations. Please
see accompanying publications for more
information.
Downloads last week: 53
Total downloads: 15,109

Full Body Model for use in Dynamic Simulations of Human Gait

Full body musculoskeletal model with
muscle-actuated lower extremity and
torque-actuated torso/upper extremity for use in
dynamic simulations of human movement.
Downloads last week: 36
Total followers: 35
Total downloads: 14,101

Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Open Knee(s) goals have been to provide free
access to three-dimensional finite element
representations of the knee joint and promote open
development of knee models for collaborative
testing and use. <B>Definitive Guide to
Project and Its Outcomes</B> Open Knee(s): A
Free and Open Source Library of Specimen-Specific
Models and Related Digital Assets for Finite
Element Analysis of the Knee Joint. Chokhandre S,
Schwartz A, Klonowski E, Landis B, Erdemir A. Ann
Biomed Eng. 2023 Jan;51(1):10-23. (<A
HREF="https://doi.org/10.1007/s10439-022-0307
4-0">https://doi.org/10.1007/s10439-022-03
074-0</A>) <B>Definitive Guide to
Open Knee(s) Data</B> Specimen specific
imaging and joint mechanical testing data for next
generation virtual knees. Chokhandre S, Neumann
EE, Nagle TF, Colbrunn RW, Flask CA, Colak C,
Halloran J, Erdemir A. Data Brief. 2021 Jan
30;35:106824. (<A
HREF="https://doi.org/10.1016/j.dib.2021.1068
24">https://doi.org/10.1016/j.dib.2021.106
824</A>) <B>Database of Open
Knee(s) Models</B> Under Downloads ->
Data Share -> View -> OKS_models and at
(<A
HREF="https://doi.org/10.18735/b0zv-n395"
;>https://doi.org/10.18735/b0zv-n395</A>)
<B>Database of Open Knee(s)
Data</B> Growing version under Downloads
-> Data Share -> View -> Open Knees Data;
permanent static version at (<A
HREF="https://doi.org/10.18735/4e78-1311"
;>https://doi.org/10.18735/4e78-1311</A>)
Downloads last week: 99
Total followers: 47
Total downloads: 151,653

Thoracolumbar spine and rib cage model in OpenSim

The aim of this project is to provide detailed and
well-validated musculoskeletal models of the
thoracolumbar spine and rib cage, particularly for
investigators with an interest studying
musculoskeletal loading in the trunk.
Total followers: 39