Parse and load MEDLINE XML data into an RDBMS.
This project imports the 2010 MEDLINE data available in XML format into a MySQL 5.1 database using Java 1.6 and MySQL Connector/J.
This is an update for 2010 based on the software described within http://www.biomedcentral.com/1471-2105/5/146/abstract and available from http://biotext.berkeley.edu/software.html.
This is a Java 1.6 project which builds with Maven 2 and runs on the command line. Once built, it can process the MEDLINE XML input files. (See http://www.nlm.nih.gov/bsd/sample_records_avail.html for an intro.)See all Downloads