RNA

Biocomputational methods complement experimental techniques to expand our understanding of RNA, molecules vital to the normal expression of genes within our bodies.

Recently updated projects

total
projects
68
projects with
downloads

News

Image not available

New package added: MMB 3.14 for Windows

MMB (MacroMoleculeBuilder) Apr 7, 2021
Image not available

ForceBalance version 1.7.0 released!

ForceBalance : Systematic Force Field Optimization Dec 3, 2019
Image not available

OpenSim gets high marks as a multibody system simulator

Simbody: Multibody Physics API Aug 3, 2015

Publications

P. Eastman, J. Swails, J. D. Chodera, R. T. McGibbon, Y. Zhao, K. A. Beauchamp, L.-P. Wang, A. C. Simmonett, M. P. Harrigan, C. D. Stern, R. P. Wiewiora, B. R. Brooks, and V. S. Pande. "OpenMM 7: Rapid development of high performance algorithms for molecular dynamics." PLOS Comp. Biol. 13(7): e1005659.

Tek, A., Korostelev, A.A. and Flores, S.C. (2015) MMB-GUI: a fast morphing method demonstrates a possible ribosomal tRNA translocation trajectory. Nucleic Acids Res., 10.1093/nar/gkv1457.

Wang, L-P., Martinez, T. J. and Pande, V.S. "Building force fields - an automatic, systematic and reproducible approach", submitted.

Discussion

Image not available

Re: unable to provide initial angular velocity in URDF file

Simbody: SimTK multibody dynamics API Dec 1, 2022
Image not available

How to remove atoms from the calculation?

OpenMM Nov 29, 2022
Image not available

Re: adding distance constrain between the centers of two molecules

OpenMM Nov 29, 2022

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Our Pledge and Your Responsibility

  About   Join
Version 4.2.0. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 6.0.5.
Feedback