Myosin

Computational methods are providing new insights into our understanding of myosin, a motor protein critical for muscle contractions.

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News

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OpenSim gets high marks as a multibody system simulator

Simbody: Multibody Physics API Aug 3, 2015
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Macromolecular Simulation Software Workshop featuring OpenMM

OpenMM Jul 15, 2015
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OpenMM 6.1 Available

OpenMM Sep 30, 2014

Publications

P. Eastman, J. Swails, J. D. Chodera, R. T. McGibbon, Y. Zhao, K. A. Beauchamp, L.-P. Wang, A. C. Simmonett, M. P. Harrigan, C. D. Stern, R. P. Wiewiora, B. R. Brooks, and V. S. Pande. "OpenMM 7: Rapid development of high performance algorithms for molecular dynamics." PLOS Comp. Biol. 13(7): e1005659.

David A. Sivak, John D. Chodera, and Gavin E. Crooks. Phys. Rev. X 3, 011007

M. Senne, B. Trendelkamp-Schroer, A.S.J.S. Mey, C. Schütte, F. Noe: "EMMA - A software package for Markov model building and analysis". J. Chem. Theo. Comput 2012, 8 (7), pp 2223–2238 DOI: 10.1021/ct300274u

Discussion

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Re: get energy of part of the system

OpenMM Aug 30, 2022
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energy from part of system (part 2)

OpenMM Aug 29, 2022
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Re: Building Simbody from source

Simbody: SimTK multibody dynamics API Aug 26, 2022

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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