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Integrated Flux Balance Analysis Model of Escherichia coli
- This project includes several MATLAB scripts that simulate E. coli central metabolism and the effects of single gene deletions on metabolism using 3 approaches -- iFBA, rFBA, and ODE. The project also includes several MATLAB scripts that simulate biochemical networks using 1) integrated flux balance analysis (iFBA) -- a combined FBA, boolean regulatory, and ODE approach; 2) regulatory flux balance analysis (rFBA); and 3) ordinary differential equations (ODE). Additionally, the project includes several MATLAB and php scripts for visualizing metabolic simulations. |
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Registered: 2008-06-11 23:27 |
LOOS: Lightweight Object Oriented Structure Library
- LOOS, the Lightweight Object Oriented Structure library, is a C++ library intended to aid the rapid development of new analysis tools for molecular simulation data. Although it is written in C++ for better performance, one of the goals of LOOS is to reproduce the feel of developing in a higher-level scripting language. |
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Registered: 2009-09-19 18:00 |