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5 projects in result set.
Integrated Flux Balance Analysis Model of Escherichia coli
- This project includes several MATLAB scripts that simulate E. coli central metabolism and the effects of single gene deletions on metabolism using 3 approaches -- iFBA, rFBA, and ODE. The project also includes several MATLAB scripts that simulate biochemical networks using 1) integrated flux balance analysis (iFBA) -- a combined FBA, boolean regulatory, and ODE approach; 2) regulatory flux balance analysis (rFBA); and 3) ordinary differential equations (ODE). Additionally, the project includes several MATLAB and php scripts for visualizing metabolic simulations. | |
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Registered: 2008-06-11 23:27 |
LOOS: Lightweight Object Oriented Structure Library
- LOOS, the Lightweight Object Oriented Structure library, is a C++ library intended to aid the rapid development of new analysis tools for molecular simulation data. Although it is written in C++ for better performance, one of the goals of LOOS is to reproduce the feel of developing in a higher-level scripting language. | |
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Activity Percentile: 45.80 Registered: 2009-09-19 18:00 |
SUNDIALS Suite of nonlinear differential algebraic solvers
- This project provides a high performance, cross platform implementation of
SUNDIALS (SUite of Nonlinear and DIfferential/ALgebraic equation Solvers).
Which consists of the following modules:
CVODE for solving ordinary differential equations using a variable order implicit solver
CVODES ODE solver with sensitivity analysis
IDA solves differential algebraic equations
KINSOL solves nonlinear algebraic systems | |
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Activity Percentile: 0.00 Registered: 2005-06-17 20:25 |
Finite element method for nonlinear solid mechanics with discontinuous Galerkin
- The library is written in C,C++, and Fortran. Thus far, it has only been tested on a linux cluster consisting of 92 Intel processors. For use of this library, the user must create a C++ driver application that will supply C style arrays containing the mesh data for the biological model. These include the standard connectivity, coordinate, and boundary data arrays. These can be given in the form of a conforming finite element mesh, since the library has a utility that will convert this data into a discontinuous finite element mesh. The user will need to decide the most appropriate way to analyze the results. Presently there is a utility that will create output files for the TecPlot visualization package.
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Activity Percentile: 0.00 Registered: 2005-08-24 19:38 |
Discrete Center Hierarchies
- Many applications require repeated computation of proximity information of a set of moving points. The discrete center hierarchy data structure allows the maintenance of such information. | |
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Activity Percentile: 0.00 Registered: 2006-03-19 16:51 |