htSNP finder - PCA Based Methods
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Publication, figures, results per dataset

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Article
Feb 2, 2017
Author: Zhen Lin
PDF of the American Journal of Human Genetics Publicaton

1. Color-version of the figures from the paper

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Figure 2
Feb 2, 2017
Author: Zhen Lin
htSNPs explaining 90% of the variance in the ACE data set.

Figure 3
Feb 2, 2017
Author: Zhen Lin
Leave-one-out cross-validation on the ACE data set.

Figure 4
Feb 2, 2017
Author: Zhen Lin
Leave-one-out cross-validation on the ABCB1 data set.

Figure 5
Feb 2, 2017
Author: Zhen Lin
10-Fold cross-validation on the IBD data set.

2. Graphic displays of htSNPs that we identified from three experimental data sets explaining 90% of variance in the data

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ABCBdataset
Feb 2, 2017
Author: Zhen Lin
htSNPs from ABCB dataset

ACEdataset
Feb 2, 2017
Author: Zhen Lin
htSNPs from ACE dataset

IBDdataset
Feb 2, 2017
Author: Zhen Lin
htSNPs from IBD dataset

3. Additional notes

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Notes on Varimax
Feb 2, 2017
Author: Zhen Lin
More descriptions and an example of finding htSNPs using the varimax rotation algorithm

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Last updated
Feb 24, 2024

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