Share 
Follow 
AboutDownloadsDocumentsForumsWikiIssuesNews
Image not available
Simbios contribution to SC09
Enclosed the movie (with voice over) to be incorporated into SC09 video plus short text file with description for incorporation into overview.
TestingBehavior
Dec 10, 2015

  

PLEASE CITE THESE PAPERS

M. S. Friedrichs, P. Eastman, V. Vaidyanathan, M. Houston, S. LeGrand, A. L. Beberg, D. L. Ensign, C. M. Bruns, V. S. Pande. “Accelerating Molecular Dynamic Simulation on Graphics Processing Units.” J. Comp. Chem., 30(6):864-872. (2009) View

Jeanette P. Schmidt, Scott L. Delp, Michael A. Sherman, Charles A. Taylor,Vijay S. Pande, Russ B. Altman, "The Simbios National Center: SystemsBiology in Motion", Proceedings of the IEEE, special issue on Computational System Biology. Volume 96, Issue 8:1266 - 1280. (2008) View

Previous Releases


TestingBehavior

Dec 10, 2015

  


TestingBehavior

Dec 10, 2015

  

Download Links

Nov 02, 2009
84 MB
Any
Data/images/video
Movie showing the folding of villin -- a 36 residue piece of a protein. Listen to Dr. Pande explain the folding process.

Documentation Links

Nov 03, 2009
Summary For SC09 Protein Folding Video


SC09Video

Nov 03, 2009

  

Download Links

Nov 02, 2009
84 MB
Any
Data/images/video
Movie showing the folding of villin -- a 36 residue piece of a protein. Listen to Dr. Pande explain the folding process.

Documentation Links

Nov 03, 2009
Summary For SC09 Protein Folding Video


Videos of Simbios Research
Videos
Aug 24, 2008

  View License

Download Links

Aug 23, 2008
51 MB
Any
Data/images/video
Movie showing the folding of villin -- a 36 residue piece of a protein. Listen to Dr. Vijay Pande explain the folding process.


Workshops
Workshops
Jul 08, 2009

Links to Simbios workshop materials that are available on-line. This is NOT a comprehensive list of all Simbios workshops.Notes  View License

Download Links

NMSBuilder Tool for OpenSim

Aug 29, 2012
130 MB
Any
Data/images/video
NMSBuilder allows the creation of patient-specific models from various imaging data. The models can be directly imported into OpenSim.

Mar 26, 2013
120 MB
Any
Other

3D RNA Modeling & Simulation

Jul 09, 2009
0
Any
Data/images/video
Link to slides, videos, and handouts for Simbios' first 3D RNA modeling workshop, featuring NAST/C2A,RNABuilder & Zephyr

Molecular Dynamics (MD) and Analysis Software

Jul 08, 2009
0
Any
Data/images/video
Link to materials for the 3-day workshop series on OpenMM, MSM Builder, and OpenMM Zephyr. First workshop on MSMBuilder.

Jul 08, 2009
0
Any
Data/images/video
Link to materials for first OpenMM workshop - a two-day event introducing participants to OpenMM and OpenMM Zephyr

OpenSim

Jul 08, 2009
0
Any
Data/images/video
Link to slides, videos, and handouts for introductory tutorial at NACOB 2008

Aug 10, 2009
0
Any
Other
Link to materials from the January 2009 workshop for developers

SimTK Core

Jul 08, 2009
0
Any
Data/images/video
Link to videos and slides for workshop for SimTK Core 1.5 release. Features tracks for neuromuscular and MD users

Jul 08, 2009
0
Any
Data/images/video
Link to slides and videos for first SimTK Core workshop


Feedback