Nov 02, 2009
84 MB
Any
Data/images/video
Movie showing the folding of villin -- a 36 residue piece of a protein. Listen to Dr. Pande explain the folding process.
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Simbios contribution to SC09
Enclosed the movie (with voice over) to be incorporated into SC09 video plus short text file with description for incorporation into overview.
SC09
Dec 10, 2015
PLEASE CITE THESE PAPERS
M. S. Friedrichs, P. Eastman, V. Vaidyanathan, M. Houston, S. LeGrand, A. L. Beberg, D. L. Ensign, C. M. Bruns, V. S. Pande. “Accelerating Molecular Dynamic Simulation on Graphics Processing Units.” J. Comp. Chem., 30(6):864-872. (2009) View
Jeanette P. Schmidt, Scott L. Delp, Michael A. Sherman, Charles A. Taylor,Vijay S. Pande, Russ B. Altman, "The Simbios National Center: SystemsBiology in Motion", Proceedings of the IEEE, special issue on Computational System Biology. Volume 96, Issue 8:1266 - 1280. (2008) View
Previous Releases
SC09Video
Nov 03, 2009
Download Links
Nov 02, 2009
84 MB
Any
Data/images/video
Movie showing the folding of villin -- a 36 residue piece of a protein. Listen to Dr. Pande explain the folding process.
Videos of Simbios Research
Videos
Aug 24, 2008
Download Links
Aug 23, 2008
51 MB
Any
Data/images/video
Movie showing the folding of villin -- a 36 residue piece of a protein. Listen to Dr. Vijay Pande explain the folding process.
Workshops
Workshops
Jul 08, 2009
Links to Simbios workshop materials that are available on-line. This is NOT a comprehensive list of all Simbios workshops.Notes View License
Download Links
NMSBuilder Tool for OpenSim
Aug 29, 2012
130 MB
Any
Data/images/video
NMSBuilder allows the creation of patient-specific models from various imaging data. The models can be directly imported into OpenSim.
Mar 26, 2013
120 MB
Any
Other
3D RNA Modeling & Simulation
Jul 09, 2009
0
Any
Data/images/video
Link to slides, videos, and handouts for Simbios' first 3D RNA modeling workshop, featuring NAST/C2A,RNABuilder & Zephyr
Molecular Dynamics (MD) and Analysis Software
Jul 08, 2009
0
Any
Data/images/video
Link to materials for the 3-day workshop series on OpenMM, MSM Builder, and OpenMM Zephyr. First workshop on MSMBuilder.
Jul 08, 2009
0
Any
Data/images/video
Link to materials for first OpenMM workshop - a two-day event introducing participants to OpenMM and OpenMM Zephyr
OpenSim
Jul 08, 2009
0
Any
Data/images/video
Link to slides, videos, and handouts for introductory tutorial at NACOB 2008
Aug 10, 2009
0
Any
Other
Link to materials from the January 2009 workshop for developers
SimTK Core
Jul 08, 2009
0
Any
Data/images/video
Link to videos and slides for workshop for SimTK Core 1.5 release. Features tracks for neuromuscular and MD users
Jul 08, 2009
0
Any
Data/images/video
Link to slides and videos for first SimTK Core workshop