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AlphaBall
AlphaBall contains a suite of program for computing the surface area and volume of unions of balls. It works on millions of balls.
V 1.0
Apr 29, 2007

  

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Apr 29, 2007
253 KB
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Source code
Compressed archive containing all source codes for AlphaBall

PLEASE CITE THESE PAPERS

H. Edelsbrunner and P. Koehl. The geometry of biomolecular solvation. Combinatorial and Computational Geometry (MSRI Publications), 52, 243-275. (2005)


DAlphaBall
V1.0
Apr 29, 2007

  

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Apr 29, 2007
277 KB
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Source code
Compressed archive containing all source codes for DAlphaBall

PLEASE CITE THESE PAPERS

R. Bryant, H. Edelsbrunner, P. Koehl and M. Levitt. The weighted area derivative of a space filling diagram. <Discrete Comput. Geom. 32 , 293-308. (2004)

H. Edelsbrunner and P. Koehl. The weighted volume derivative of a space filling diagram. Proc. Natl. Acad. Sci. (USA) 100, 2203-2208 (2003)


ParsePDB
ParsePDB is a simple PDB parser that reads in a PDB file and outputs a generic coordinate files that can be read by geometric packages. Currently, ParsePDB reads in proteins only.
V 1.0
Apr 29, 2007

  

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Apr 29, 2007
43 KB
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Source code
Compressed archive containing all source codes for ParsePDB


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