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The first package contains the R code for extracting fundamental components as well as for analyzing new datasets in terms of the human fundamental components we identified. The second package contains lists of genes in the dominant modules for our 423 human fundamental components.
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FCAnalysis R Package
This R package contains code for extracting fundamental components from a compendium of microarray data. It also contains an R data file of our human fundamental components.
Version 1.0.0
Jun 21, 2010

First release  

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Jun 21, 2010
37 MB
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Source code
FCAnalysis R package

PLEASE CITE THESE PAPERS

Engreitz JM, Daigle Jr. BJ, Marshall JJ, Altman RB. Independent component analysis: mining microarray data for fundamental human gene modules. Journal of Biomedical Informatics. (in revision) (2010)


Fundamental module gene lists
This package contains text tables of the active genes in the dominant modules of our 423 fundamental human gene expression modules.
1.0.0
Jun 21, 2010

  

Download Links

Jun 21, 2010
2 MB
Any
Data/images/video

PLEASE CITE THESE PAPERS

Engreitz JM, Daigle Jr. BJ, Marshall JJ, Altman RB. Independent component analysis: mining microarray data for fundamental human gene modules. Journal of Biomedical Informatics. (in revision) (2010)


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