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ribosome-icf
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May 14, 2012

trajectory in .pdb format, fitted structures, movies, MMB input files.  

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Jul 04, 2013
134 MB
Any
Data/images/video
This shows the transition from PRE2 to PRE3. First frame consists of extended chains, to aid bond network recognition.

Jul 04, 2013
1 MB
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Data/images/video
All the files needed to reproduce the tRNA fitting run on your laptop.

Jul 05, 2013
9 MB
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movie of elongation in MPG format

Aug 24, 2013
375 KB
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Data/images/video
Movie of 1BA2 Ribose Binding Protein being ICFF fitted to synthetic density map from 2DRI.

Oct 08, 2013
48 MB
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Data/images/video
Similar to full-trajectory.mpg, but in 23S-fixed frame. Also, this is zoomed in closer to focus on tRNA motions.

Jul 04, 2013
67 MB
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Data/images/video
PRE3-PRE4 trajectory. Note tRNA stem flexibility.

Jul 04, 2013
6 MB
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Movie showing all-vs-all fitting of P/E, P/P, A/T tRNAs into synthetic density maps

Jul 05, 2013
640 MB
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Data/images/video
Full trajectory

Jan 13, 2013
4 MB
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Data/images/video
A second perspective of the tRNA-as-pawl mechanism without proteins or 23S, and with gate highlighted

Jan 13, 2013
2 MB
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Data/images/video
tRNA-as-pawl mechanism in E. Coli with proteins and 23S

Jan 13, 2013
52 MB
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trajectory of tRNA rotating to allow 16S to back-rotate, completing translocation (E. Coli)

Jan 13, 2013
615 MB
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Data/images/video
Head opening to allow tRNA through the gate, completing translocatio (E. Coli)

Jan 22, 2013
9 MB
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Jan 22, 2013
9 MB
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Jun 24, 2013
1 MB
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Structure fitted to Fischer et al. PRE3 density map

Jul 04, 2013
12 MB
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Structure fitted to Fischer et al. PRE4 density map. Anticodon stem bend. First frame has extended chains, to aid bond network recognition.

Jan 22, 2013
9 MB
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Data/images/video

Jan 22, 2013
4 MB
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Jan 22, 2013
9 MB
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Data/images/video

Jan 22, 2013
9 MB
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Data/images/video

May 13, 2013
224 MB
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All files needed for morphing tRNA-as-pawl trajectory in E.Coli

PLEASE CITE THESE PAPERS

Samuel Coulbourn Flores, "Fast fitting to low resolution density maps: elucidating large scale motions of the ribosome", NAR (accepted) (2013)


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