An optimized programing of Kinfold1.0 that is capable of processing up to 5 intermediates. one to three intermediates have the possibility to be processed on a desktop computer instead of on a multiple node cluster. This portion also uses an analytical solution to the folding equations.
Exhaustive Enumeration of Kinetic Model Topologies for the Analysis of Time-Resolved RNA Folding. J.S. Martin, K. Simmons, and A. Laederach. Algorithms. (2009)
This is a stand alone package for OSX for Kinfold that can be run without matlab installed. MCR should be installed first which is included in the package