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10 projects in result set.
SimVascular: Examples and Clinical Cases
- We invite you to download and try these examples and clinical case projects, which are all compatible with the open source SimVascular cardiovascular modeling software package. Each case includes image data of a healthy or diseased individual, a 3D anatomic model created from the image data, and simulation job files which specify initial conditions, boundary conditions and various parameters required to run the simulation. Many of the cases are already organized as SV projects, which means you can easily load them into SimVascular and view or try out various project components. Following the guides in the SimVascular documentation website, you can also create new models and run simulations with different conditions, based on these example cases.
You are free to download the examples and cases provided that you properly reference the source. The cases are part of the academic output of the researcher cited and should be referred to as such. Permission is granted to use these cases for research purposes, but for commercial use please contact the director of the Cardiovascular Biomechanics Computation Lab, Alison Marsden (amarsden@stanford.edu).
The examples and clinical cases included are:
Example: Demo Project
Example: Cylinder Project (no image, for simulation)
Clinical Case: Coronary Normal
Clinical Case: Aortofemoral Normal 1
Clinical Case: Aortofemoral Normal 2
Clinical Case: Healthy Pulmonary
SimVascular is available for download at our project website at:
https://simtk.org/projects/simvascular
Comprehensive documentation is available on the SimVascular website at:
http://www.simvascular.org
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Activity Percentile: 94.70 Registered: 2014-03-14 20:12 |
MIcro Simulation Tool - MIST
- The MIcro Simulation Tool is free software that allows the user to :
* Define state transition models with multiple processes
* Generate populations to match given statistics using Evolutionary Computation
* Run Simulations in High Performance Computing environment - including the cloud
* Analyze and Report the results
Below are some videos that describe MIST capabilities:
This video shows the basic ideas behind MIST
<iframe width="640" height="360" src="https://www.youtube.com/embed/AD896WakR94" frameborder="0" allowfullscreen></iframe>
This video shows some population generation capabilities using Evolutionary Computation:
<iframe width="640" height="360" src="https://www.youtube.com/embed/PPpmUq8ueiY" frameborder="0" allowfullscreen></iframe>
This video will show how MIST runs over the cloud:
<iframe width="640" height="360" src="https://www.youtube.com/embed/wpfw8POx-wI" frameborder="0" allowfullscreen></iframe>
This video will show how MIST modeled COVID19 in <a href="https://devpost.com/software/improved-disease-modeling-tools-for-populations">Pandemic Response Hackathon</a>
<iframe width="640" height="360" src="https://www.youtube.com/embed/0ElKy0Ysz3I" frameborder="0" allow="accelerometer; autoplay; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
The Reference Model is one examples of use of MIST. It can be found in the following link:
https://simtk.org/projects/therefmodel
MIST version 0.92.5.0 is released to the public. It has limited capabilities. For later versions with enhanced capabilities, please contact the developer.
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Registered: 2014-08-21 20:53 |
Open MM and Zephyr applications to XBOX360 platform.
- This project is intended to use the OpenMM and Zephyr source code for compilation upon the XBOX 360 platforms. An executable with the functionality of Zephyr is desired. | |
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Activity Percentile: 0.00 Registered: 2009-12-25 17:02 |
2007BioE15 Bruns
- Project for class. Hey! Guess what! It is required to put a longer \"detailed\" description into this area by the set up form! The retarded error message just says \"longer\", so who knows how long I have to keep spitting up this junk to keep the darn thing happy? | |
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Activity Percentile: 0.00 Registered: 2007-04-11 01:29 |
Hierarchical Human Biomechanics Framework
- This project intends to build a virtual anatomical object library to hierarchiclally implement human biomechanics simulators used to improve clinical approaches and human biotech products. | |
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Activity Percentile: 0.00 Registered: 2008-04-25 12:23 |
SimVascular: Third-party open source software.
- Third party open source software needed by internal developers of the new SimVascular project. | |
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Registered: 2013-12-10 23:33 |
Purkinje Network Generation with Fractal Trees
- This project is a tool to generate Purkinje networks in realistic representations of the ventricles. Using fractal trees, our method provides an anatomically based approximation to the network. The input consist of a surface discretized with triangles and the output consist of a finite element mesh, suitable for simulations.
The source code is available in this repository and in <a href="https://www.github.com/fsahli/fractal-tree/">GitHub</a>. The documentation can be found in <a href="https://fractal-tree.readthedocs.org">fractal-tree.readthedocs.org</a>. | |
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Activity Percentile: 0.00 Registered: 2015-11-25 00:10 |
PySimTK: SimTK core multibody dynamics tool kit in python
- This project creates an easier to use python API for the SimTK core multibody mechanics simulation tool kit. | |
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Registered: 2009-07-29 17:59 |
BioGears: An open source mathematical model of the human physiology.
- BioGears is an open source, comprehensive, extensible human physiology engine that will drive medical education, research, and training technologies. BioGears enables accurate and consistent physiology simulation across the medical community. The engine can be used as a standalone application or integrated with simulators, sensor interfaces, and models of all fidelities. | |
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Activity Percentile: 0.00 Registered: 2014-10-09 18:12 |
3D Numerical Investigation of Endothelial Shear Stress in Arteries
- 3D numerical investigation of endothelial shear stress in coronary arteries. | |
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Activity Percentile: 0.00 Registered: 2015-11-30 13:34 |