Simbios Dissemination

Main repository for Simbios dissemination-related
tasks and materials
Downloads last week: 30

OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 4,342
Total downloads: 1,198,001

Personalizable Kinematic Shoulder Model

This project provides a kinematic shoulder model
that can be personalized via the NMSM Pipeline.
Included are all scripts and data necessary to
develop a personalized shoulder model.
New download files: 1

Model of the Scapulothoracic Joint

Provide an OpenSim Joint model that enables a more
accurate representation of scapula mechanics in
musculoskeletal simulations.
Downloads last week: 31
Total followers: 30
Total downloads: 10,743

Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how
muscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Total followers: 42
Total downloads: 26,488

OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 2,526
Forum posts last week: 6
Total followers: 66
Total downloads: 842,502

Reproducibility in simulation­-based prediction of natural knee mechanics

This project aims for understanding the influence
of modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 78
Total downloads: 28,162

OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,891
Forum posts last week: 11
Total followers: 318
Total downloads: 819,455

SCONE: Open Source Software for Predictive Simulation

<img
src="https://scone.software/scone_window.png&
quot; alt="SCONE">SCONE is free and
open-source software for <b>predictive
simulation</b> of human and animal
motion. With SCONE, you can define and optimize
<b>neuromuscular controllers</b> to
optimally perform a specific task, according to
<b>high-level objectives</b> such as
walking speed and energy efficiency. Please
visit the <a
href="https://scone.software">SCONE
homepage</a> for more information, or check
<a
href="https://scone.software/doku.php?id=chan
ges">what's new</a> in the latest
version.
Forum posts last week: 4
Total followers: 35

Dynamic Arm Simulator

Provides a real-time, dynamic simulation of arm
movement.
Total followers: 39

2007BioE15 Bruns

Submit materials for class
Total followers: 79

OpenGRF: free OpenSim API tool for Ground Reaction Forces prediction

OpenGRF is a free OpenSim tool built on the MATLAB
API, designed to predict ground reaction forces
(GRFs). The tool accepts as input a scaled or
subject-specific musculoskeletal (MSK) model
(.osim) and a kinematics file (.mot) containing
the generalized c
Forum posts last week: 1

Thoracolumbar spine and rib cage model in OpenSim

The aim of this project is to provide detailed and
well-validated musculoskeletal models of the
thoracolumbar spine and rib cage, particularly for
investigators with an interest studying
musculoskeletal loading in the trunk.
Forum posts last week: 2
Total followers: 39

SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 47
Total downloads: 15,033

How peak knee loads are affected by changing leg segment masses during walking

Accompanying dataset and code for our manuscript,
"How peak knee loads are affected by changing
the mass of lower-limb body segments during
walking," for PLOS Computational Biology (in
review).
Forum posts last week: 1
New download files: 14
New members: 8