OpenSim
OpenSim 3.1
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This defines the abstract ModelComponent class, which is used to add computational components to the underlying SimTK::System (MultibodySystem). More...
#include <ModelComponent.h>
Classes | |
struct | CacheInfo |
struct | DiscreteVariableInfo |
struct | ModelingOptionInfo |
struct | StateVariableInfo |
Public Member Functions | |
ModelComponent () | |
Default constructor. | |
ModelComponent (const std::string &aFileName, bool aUpdateFromXMLNode=true) SWIG_DECLARE_EXCEPTION | |
Construct ModelComponent from an XML file. | |
ModelComponent (SimTK::Xml::Element &aNode) | |
Construct ModelComponent from a specific node in an XML document. | |
ModelComponent (const ModelComponent &source) | |
Construct ModelComponent with its contents copied from another ModelComponent; this is a deep copy so nothing is shared with the source after the copy. | |
virtual | ~ModelComponent () |
Destructor is virtual to allow concrete model component cleanup. | |
ModelComponent & | operator= (const ModelComponent &aModelComponent) |
Assignment operator to copy contents of an existing component. | |
const Model & | getModel () const |
Get a const reference to the Model this component is part of. | |
Model & | updModel () |
Get a modifiable reference to the Model this component is part of. | |
virtual void | updateDisplayer (const SimTK::State &s) const |
In case the ModelComponent has a visual representation (VisualObject), override this method to update it. | |
virtual int | getNumStateVariables () const |
Get the number of "Continuous" state variables maintained by the ModelComponent and its specified subcomponents. | |
virtual Array< std::string > | getStateVariableNames () const |
Get the names of "continuous" state variables maintained by the ModelComponent and its subcomponents. | |
virtual SimTK::SystemYIndex | getStateVariableSystemIndex (const std::string &stateVariableName) const |
Get the System Index of a state variable allocated by this ModelComponent. | |
ModelComponent State Access methods | |
Get and set modeling option, state, discrete and/or cache variables in the State | |
int | getModelingOption (const SimTK::State &state, const std::string &name) const |
Get a ModelingOption flag for this ModelComponent by name. | |
void | setModelingOption (SimTK::State &state, const std::string &name, int flag) const |
Set the value of a ModelingOption flag for this ModelComponent. | |
double | getStateVariable (const SimTK::State &state, const std::string &name) const |
Get the value of a state variable allocated by this ModelComponent. | |
void | setStateVariable (SimTK::State &state, const std::string &name, double value) const |
Set the value of a state variable allocated by this ModelComponent by name. | |
double | getDiscreteVariable (const SimTK::State &state, const std::string &name) const |
Get the value of a discrete variable allocated by this ModelComponent by name. | |
void | setDiscreteVariable (SimTK::State &state, const std::string &name, double value) const |
Set the value of a discrete variable allocated by this ModelComponent by name. | |
template<typename T > | |
const T & | getCacheVariable (const SimTK::State &state, const std::string &name) const |
Get the value of a cache variable allocated by this ModelComponent by name. | |
template<typename T > | |
T & | updCacheVariable (const SimTK::State &state, const std::string &name) const |
Obtain a writable cache variable value allocated by this ModelComponent by name. | |
void | markCacheVariableValid (const SimTK::State &state, const std::string &name) const |
After updating a cache variable value allocated by this ModelComponent, you can mark its value as valid, which will not change until the realization stage falls below the minimum set at the time the cache variable was created. | |
void | markCacheVariableInvalid (const SimTK::State &state, const std::string &name) const |
Mark a cache variable value allocated by this ModelComponent as invalid. | |
bool | isCacheVariableValid (const SimTK::State &state, const std::string &name) const |
Enables the to monitor the validity of the cache variable value using the returned flag. | |
template<typename T > | |
void | setCacheVariable (const SimTK::State &state, const std::string &name, const T &value) const |
Set cache variable value allocated by this ModelComponent by name. | |
Public Member Functions inherited from OpenSim::Object | |
virtual | ~Object () |
Virtual destructor for cleanup. | |
virtual Object * | clone () const =0 |
Create a new heap-allocated copy of the concrete object to which this Object refers. | |
virtual const std::string & | getConcreteClassName () const =0 |
Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. | |
virtual const VisibleObject * | getDisplayer () const |
Methods to support making the object displayable in the GUI or Visualizer Implemented only in few objects. | |
virtual VisibleObject * | updDisplayer () |
get Non const pointer to VisibleObject | |
bool | isEqualTo (const Object &aObject) const |
Equality operator wrapper for use from languages not supporting operator overloading. | |
Object & | operator= (const Object &aObject) |
Copy assignment copies he base class fields, including the properties. | |
virtual bool | operator== (const Object &aObject) const |
Determine if two objects are equal. | |
virtual bool | operator< (const Object &aObject) const |
Provide an ordering for objects so they can be put in sorted containers. | |
void | setName (const std::string &name) |
Set the name of the Object. | |
const std::string & | getName () const |
Get the name of this Object. | |
void | setDescription (const std::string &description) |
Set description, a one-liner summary. | |
const std::string & | getDescription () const |
Get description, a one-liner summary. | |
const std::string & | getAuthors () const |
Get Authors of this Object. | |
void | setAuthors (const std::string &authors) |
Set Authors of this object, call this method in your constructor if needed. | |
const std::string & | getReferences () const |
Get references or publications to cite if using this object. | |
void | setReferences (const std::string &references) |
Set references or publications to cite if using this object. | |
int | getNumProperties () const |
Determine how many properties are stored with this Object. | |
const AbstractProperty & | getPropertyByIndex (int propertyIndex) const |
Get a const reference to a property by its index number, returned as an AbstractProperty. | |
AbstractProperty & | updPropertyByIndex (int propertyIndex) |
Get a writable reference to a property by its index number, returned as an AbstractProperty. | |
bool | hasProperty (const std::string &name) const |
Return true if this Object has a property of any type with the given name, which must not be empty. | |
const AbstractProperty & | getPropertyByName (const std::string &name) const |
Get a const reference to a property by its name, returned as an AbstractProperty. | |
AbstractProperty & | updPropertyByName (const std::string &name) |
Get a writable reference to a property by its name, returned as an AbstractProperty. | |
template<class T > | |
bool | hasProperty () const |
Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. | |
template<class T > | |
const Property< T > & | getProperty (const PropertyIndex &index) const |
Get property of known type Property<T> as a const reference; the property must be present and have the right type. | |
template<class T > | |
Property< T > & | updProperty (const PropertyIndex &index) |
Get property of known type Property<T> as a writable reference; the property must be present and have the right type. | |
void | setObjectIsUpToDateWithProperties () |
When an object is initialized using the current values of its properties, it can set a flag indicating that it is up to date. | |
bool | isObjectUpToDateWithProperties () const |
Returns true if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. | |
void | readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber) |
We're given an XML element from which we are to populate this Object. | |
virtual void | updateFromXMLNode (SimTK::Xml::Element &objectElement, int versionNumber) |
Use this method to deserialize an object from a SimTK::Xml::Element. | |
virtual void | updateXMLNode (SimTK::Xml::Element &parent) |
Serialize this object into the XML node that represents it. | |
bool | getInlined () const |
Inlined means an in-memory Object that is not associated with an XMLDocument. | |
void | setInlined (bool aInlined, const std::string &aFileName="") |
Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. | |
std::string | getDocumentFileName () const |
If there is a document associated with this object then return the file name maintained by the document. | |
void | setAllPropertiesUseDefault (bool aUseDefault) |
bool | print (const std::string &fileName) |
Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". | |
std::string | dump (bool dumpName=false) |
dump the XML representation of this Object into an std::string and return it. | |
void | clearObjectIsUpToDateWithProperties () |
For testing or debugging purposes, manually clear the "object is up to
date with respect to properties" flag. | |
virtual bool | isA (const char *type) const |
The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. | |
const std::string & | toString () const |
Wrapper to be used on Java side to display objects in tree; this returns just the object's name. | |
PropertySet & | getPropertySet () |
OBSOLETE: Get a reference to the PropertySet maintained by the Object. | |
const PropertySet & | getPropertySet () const |
Protected Member Functions | |
ModelComponent Basic Interface | |
The interface ensures that deserialization, resolution of inter-connections, and handling of dependencies are performed systematically and prior to system creation, followed by allocation of necessary System resources. These methods are virtual and may be implemented by subclasses of ModelComponents.
The base class implementations here do two things: (1) take care of any needs of the ModelComponent base class itself, and then (2) ensure that the corresponding calls are made to any subcomponents that have been specified by derived ModelComponent objects, via calls to the includeAsSubComponent() method. So assuming that your concrete ModelComponent and all intermediate classes from which it derives properly follow the requirement of calling the Super class method first, the order of operations enforced here for a call to a single method will be
You should consider this ordering when designing a ModelComponent. In particular the fact that all your subcomponents will be invoked before you are may be surprising. | |
virtual void | connectToModel (Model &model) |
Perform any necessary initializations required to connect the component into the Model, and check for error conditions. | |
virtual void | addToSystem (SimTK::MultibodySystem &system) const |
Add appropriate Simbody elements (if needed) to the System corresponding to this component and specify needed state resources. | |
virtual void | initStateFromProperties (SimTK::State &state) const |
Transfer property values or other state-independent initial values into this component's state variables in the passed-in state argument. | |
virtual void | setPropertiesFromState (const SimTK::State &state) |
Update this component's property values to match the specified State, if the component has created any state variable that is intended to correspond to a property. | |
virtual SimTK::Vector | computeStateVariableDerivatives (const SimTK::State &s) const |
If a model component has allocated any continuous state variables using the addStateVariable() method, then computeStateVariableDerivatives() must be implemented to provide time derivatives for those states. | |
virtual void | generateDecorations (bool fixed, const ModelDisplayHints &hints, const SimTK::State &state, SimTK::Array_< SimTK::DecorativeGeometry > &appendToThis) const |
Optional method for generating arbitrary display geometry that reflects this ModelComponent at the specified state. | |
ModelComponent Advanced Interface | |
You probably won't need to override methods in this section. These provide a way for you to perform computations ("realizations") that must be scheduled in carefully-ordered stages as described in the class description above. The typical operation will be that the given SimTK::State provides you with the inputs you need for your computation, which you will then write into some element of the state cache, where later computations can pick it up.
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virtual void | realizeTopology (SimTK::State &state) const |
Obtain state resources that are needed unconditionally, and perform computations that depend only on the system topology. | |
virtual void | realizeModel (SimTK::State &state) const |
Obtain state resources that may be needed, depending on modeling options, and perform computations that depend only on topology and selected modeling options. | |
virtual void | realizeInstance (const SimTK::State &state) const |
Perform computations that depend only on instance variables, like lengths and masses. | |
virtual void | realizeTime (const SimTK::State &state) const |
Perform computations that depend only on time and earlier stages. | |
virtual void | realizePosition (const SimTK::State &state) const |
Perform computations that depend only on position-level state variables and computations performed in earlier stages (including time). | |
virtual void | realizeVelocity (const SimTK::State &state) const |
Perform computations that depend only on velocity-level state variables and computations performed in earlier stages (including position, and time). | |
virtual void | realizeDynamics (const SimTK::State &state) const |
Perform computations (typically forces) that may depend on dynamics-stage state variables, and on computations performed in earlier stages (including velocity, position, and time), but not on other forces, accelerations, constraint multipliers, or reaction forces. | |
virtual void | realizeAcceleration (const SimTK::State &state) const |
Perform computations that may depend on applied forces. | |
virtual void | realizeReport (const SimTK::State &state) const |
Perform computations that may depend on anything but are only used for reporting and cannot affect subsequent simulation behavior. | |
ModelComponent System Creation and Access Methods | |
These methods support implementing concrete ModelComponents. Add methods can only be called inside of addToSystem() and are useful for creating the underlying SimTK::System level variables that are used for computing values of interest.
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void | includeAsSubComponent (ModelComponent *aComponent) |
Include another ModelComponent as a Subcomponent of this ModelComponent. | |
void | addModelingOption (const std::string &optionName, int maxFlagValue) const |
Add a modeling option (integer flag stored in the State) for use by this ModelComponent. | |
void | addStateVariable (const std::string &stateVariableName, SimTK::Stage invalidatesStage=SimTK::Stage::Dynamics) const |
Add a continuous system state variable belonging to this ModelComponent, and assign a name by which to refer to it. | |
void | addDiscreteVariable (const std::string &discreteVariableName, SimTK::Stage invalidatesStage) const |
Add a system discrete variable belonging to this ModelComponent, give it a name by which it can be referenced, and declare the lowest Stage that should be invalidated if this variable's value is changed. | |
template<class T > | |
void | addCacheVariable (const std::string &cacheVariableName, const T &variablePrototype, SimTK::Stage dependsOnStage) const |
Add a state cache entry belonging to this ModelComponent to hold calculated values that must be automatically invalidated when certain state values change. | |
const int | getStateIndex (const std::string &name) const |
Get the index of a ModelComponent's continuous state variable in the Subsystem for allocations. | |
const SimTK::DiscreteVariableIndex | getDiscreteVariableIndex (const std::string &name) const |
Get the index of a ModelComponent's discrete variable in the Subsystem for allocations. | |
const SimTK::CacheEntryIndex | getCacheVariableIndex (const std::string &name) const |
Get the index of a ModelComponent's cache variable in the Subsystem for allocations. | |
Protected Member Functions inherited from OpenSim::Object | |
Object () | |
The default constructor is only for use by constructors of derived types. | |
Object (const std::string &fileName, bool aUpdateFromXMLNode=true) SWIG_DECLARE_EXCEPTION | |
Constructor from a file, to be called from other constructors that take a file as input. | |
Object (const Object &source) | |
Copy constructor is invoked automatically by derived classes with default copy constructors; otherwise it must be invoked explicitly. | |
Object (SimTK::Xml::Element &aElement) | |
Construct the base class portion of an Object from a given Xml element that describes this Object. | |
template<class T > | |
PropertyIndex | addProperty (const std::string &name, const std::string &comment, const T &value) |
Define a new single-value property of known type T, with the given name, associated comment, and initial value. | |
template<class T > | |
PropertyIndex | addOptionalProperty (const std::string &name, const std::string &comment) |
Add an optional property, meaning it can contain either no value or a single value. | |
template<class T > | |
PropertyIndex | addOptionalProperty (const std::string &name, const std::string &comment, const T &value) |
Add an optional property, meaning it can contain either no value or a single value. | |
template<class T > | |
PropertyIndex | addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize) |
Define a new list-valued property of known type T, with the given name, associated comment, minimum (==0) and maximum (>0) allowable list lengths, and a zero-length initial value. | |
template<class T , template< class > class Container> | |
PropertyIndex | addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize, const Container< T > &valueList) |
Define a new list-valued property as above, but assigning an initial value via some templatized container class that supports size() and indexing. | |
PropertyIndex | getPropertyIndex (const std::string &name) const |
Look up a property by name and return its PropertyIndex if it is found. | |
template<class T > | |
PropertyIndex | getPropertyIndex () const |
Look up an unnamed property by the type of object it contains, and return its PropertyIndex if it is found. | |
void | updateFromXMLDocument () |
Use this method only if you're deserializing from a file and the object is at the top level; that is, primarily in constructors that take a file name as input. | |
void | setDocument (XMLDocument *doc) |
Unconditionally set the XMLDocument associated with this object. | |
const XMLDocument * | getDocument () const |
Get a const pointer to the document (if any) associated with this object. | |
XMLDocument * | updDocument () |
Get a writable pointer to the document (if any) associated with this object. |
Protected Attributes | |
Model * | _model |
The model this component belongs to. | |
Protected Attributes inherited from OpenSim::Object | |
PropertySet | _propertySet |
OBSOLETE: Property_Deprecated set for serializable member variables of this and derived classes. |
Friends | |
class | ModelComponentSet |
class | ModelComponentMeasure |
Additional Inherited Members | |
Static Public Member Functions inherited from OpenSim::Object | |
static void | registerType (const Object &defaultObject) |
Register an instance of a class; if the class is already registered it will be replaced. | |
static void | renameType (const std::string &oldTypeName, const std::string &newTypeName) |
Support versioning by associating the current Object type with an old name. | |
static const Object * | getDefaultInstanceOfType (const std::string &concreteClassName) |
Return a pointer to the default instance of the registered (concrete) Object whose class name is given, or NULL if the type is not registered. | |
template<class T > | |
static bool | isObjectTypeDerivedFrom (const std::string &concreteClassName) |
Return true if the given concrete object type represents a subclass of the template object type T, and thus could be referenced with a T*. | |
static Object * | newInstanceOfType (const std::string &concreteClassName) |
Create a new instance of the concrete Object type whose class name is given as concreteClassName. | |
static void | getRegisteredTypenames (Array< std::string > &typeNames) |
Retrieve all the typenames registered so far. | |
template<class T > | |
static void | getRegisteredObjectsOfGivenType (ArrayPtrs< T > &rArray) |
Return an array of pointers to the default instances of all registered (concrete) Object types that derive from a given Object-derived type that does not have to be concrete. | |
static void | PrintPropertyInfo (std::ostream &os, const std::string &classNameDotPropertyName) |
Dump formatted property information to a given output stream, useful for creating a "help" facility for registered objects. | |
static void | PrintPropertyInfo (std::ostream &os, const std::string &className, const std::string &propertyName) |
Same as the other signature but the class name and property name are provided as two separate strings. | |
static Object * | makeObjectFromFile (const std::string &fileName) |
Create an OpenSim object whose type is based on the tag at the root node of the XML file passed in. | |
static const std::string & | getClassName () |
Return the name of this class as a string; i.e., "Object". | |
static void | setSerializeAllDefaults (bool shouldSerializeDefaults) |
Static function to control whether all registered objects and their properties are written to the defaults section of output files rather than only those values for which the default was explicitly overwritten when read in from an input file or set programmatically. | |
static bool | getSerializeAllDefaults () |
Report the value of the "serialize all defaults" flag. | |
static bool | isKindOf (const char *type) |
Returns true if the passed-in string is "Object"; each Object-derived class defines a method of this name for its own class name. | |
static void | setDebugLevel (int newLevel) |
Set the debug level to get verbose output. | |
static int | getDebugLevel () |
Get current setting of debug level. | |
static Object * | SafeCopy (const Object *aObject) |
Use the clone() method to duplicate the given object unless the pointer is null in which case null is returned. | |
static void | RegisterType (const Object &defaultObject) |
OBSOLETE alternate name for registerType(). | |
static void | RenameType (const std::string &oldName, const std::string &newName) |
OBSOLETE alternate name for renameType(). | |
Static Public Attributes inherited from OpenSim::Object | |
static const std::string | DEFAULT_NAME |
Name used for default objects when they are serialized. | |
Related Functions inherited from OpenSim::Object | |
#define | OpenSim_DECLARE_CONCRETE_OBJECT(ConcreteClass, SuperClass) |
Macro to be included as the first line of the class declaration for any non-templatized, concrete class that derives from OpenSim::Object. | |
#define | OpenSim_DECLARE_ABSTRACT_OBJECT(ConcreteClass, SuperClass) |
Macro to be included as the first line of the class declaration for any still-abstract class that derives from OpenSim::Object. | |
#define | OpenSim_DECLARE_CONCRETE_OBJECT_T(ConcreteClass, TArg, SuperClass) |
Macro to be included as the first line of the class declaration for any templatized, concrete class that derives from OpenSim::Object, like Set<T>. | |
#define | OpenSim_DECLARE_ABSTRACT_OBJECT_T(ConcreteClass, TArg, SuperClass) |
Macro to be included as the first line of the class declaration for any templatized, still-abstract class that derives from OpenSim::Object. |
This defines the abstract ModelComponent class, which is used to add computational components to the underlying SimTK::System (MultibodySystem).
It specifies the interface that components must satisfy in order to be part of the system and provides a series of helper methods for adding variables (state, discrete, cache, ...) to the underlying system. As such, ModelComponent handles all of the bookkeeping of system indices and provides convenience access to variable values via their names as strings.
The MultibodySystem and its State are defined by Simbody (ref ...). Briefly, a System can be thought of the equations that define the mathematical behavior of a model. The State is a collection of all the variables that uniquely define the unknowns in the system equations. These would be joint coordinates, their speeds, accelerations as well other variables that govern system dynamics (e.g. muscle activation and fiber-length variables that dictate muscle force). These variables are called continuous state variables in Simbody, but are more simply referred to as StateVariables in OpenSim. ModelComponent provides services to define and access its StateVariables and specify their dynamics (derivatives with respect to time) that are automatically and simultaneously integrated with the MultibodySystem dynamics.
There are other types of "State" variables such as a flag (or option) that enables a component to be disabled or for a muscle force to be overridden and and these are identified as ModelingOptions since they fundamentally change the modeled dynamics of the component. ModelComponent provides services that enable developers of components to define additional ModelingOptions.
Often a component requires input from an outside source (precomputed data from a file, another program, or interaction from a user) in which case these variables do not have dynamics (differential eqns.) known to the component, but are necessary to describe the dynamical "state" of the system. An example, is a throttle component (a "controller" that provides an actuator (e.g. a motor) with a control signal (a voltage or current)) which it gets direct input from the user (via a joystick, key press, etc..). The throttle controls the motor torque output and therefore the behavior of the model. The input by the user to the throttle the motor (the controls) is necessary to specify the model dynamics at any instant and therefore are considered part of the State in Simbody as Discrete State Variables. In OpenSim they are simplify referred to as DiscreteVariables. The ModelComponent provides services to enable developers of components to define and access its DiscreteVariables.
Fast and efficient simulations also require computationally expensive calculations to be performed only when necessary. Often the result of a expensive calculation can be reused many times over, while the variables it is dependent on remain fixed. The concept of holding onto these values is called caching and the variables that hold these values are call CacheVariables. It is important to note, that cache variables are not state variables. Cache variables can always be recomputed excactly from the State. OpenSim uses the Simbody infrastructure to manage cache variables and their validity. ModelComponent provides a simplified interface to define and access CacheVariables.
Many modeling and simulation codes put the onus on users and component creators to manage the validity of cache variables, which is likely to lead to undetectable errors where cache values are stale (calculated based on past state variable values). Simbody, on the other hand, provides a more strict infrastructure to make it easy to exploit the efficiencies of caching while reducing the risks of validity errors. To do this, Simbody employs the concept of computational stages. To "realize" a model's system to a particular stage is to perform all the computations necessary to evaluate the cached quantities up to and including the stage specified. Simbody utilizes nine realization stages (SimTK::Stage::
)
Topology
finalize System with "slots" for most variables (above)Model
specify modeling choicesInstance
specify modifiable model parametersTime
compute time dependent quantitiesPosition
compute position dependent quantitiesVelocity
compute velocity dependent quantitiesDynamics
compute system applied forces and dependent quantitiesAcceleration
compute system accelerations and all other derivativesReport
compute quantities for reporting/outputThe ModelComponent interface is automatically invoked by the System and its realizations. Component users and most developers need not concern themselves with Topology
, Model
or Instance
stages. That interaction is managed by ModelComponent when component creators implement addToSystem() and use the services provided ModelComponent. Component creators do need to determine and specify stage dependencies for Discrete and CacheVariables that they add to their components. For example, the throttle controller reads its value from user input and it is valid for all calculations as long as time does not change. If the simulation (via numerical integration) steps forward (or backward for a trial step) and updates the state, the control from a previous state (time) should be invalid and an error generated for trying to access the DiscreteVariable for the control value. To do this one specifies the "invalidates" stage (e.g. SimTK::Stage::Time
) for a DiscreteVariable when the variable is added to the ModelComponent. A subsequent change to that variable will invalidate all state cache entries at that stage or higher. For example, if a DiscreteVariable is declared to invalidate Stage::Position
then changing it will invalidate cache entries that depend on positions, velocities, forces, and accelerations.
Similar principles apply to CacheVariables, which requires a "dependsOn" stage to be specified when a CacheVariable is added to the component. In this case, the cache variable "shadows" the State (unlike a DiscreteVariable, which is a part of the State) holding already-computed state-dependent values so that they do not need to be recomputed until the state changes. Accessing the CacheVariable in a State whose current stage is lower than that CacheVariable's specified dependsOn stage will trigger an exception. It is up to the component to update the value of the cache variable. ModelComponent provides methods to check if the cache is valid, update its value and mark as valid.
All components: Bodies, Joints, Coordinates, Constraints, Forces, Controllers, and even Model itself, are ModelComponents. Each component is "connected" to a SimTK::Subsystem and by default this is the System's DefaultSubsystem.
The primary responsibility of a ModelComponent is to add its computational representation(s) to the underlying SimTK::System by implementing addToSystem().
Additional methods provide support for adding modeling options, state and cache variables.
Public methods enable access to component variables via their names.
OpenSim::ModelComponent::ModelComponent | ( | ) |
Default constructor.
OpenSim::ModelComponent::ModelComponent | ( | const std::string & | aFileName, |
bool | aUpdateFromXMLNode = true |
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) |
Construct ModelComponent from an XML file.
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explicit |
Construct ModelComponent from a specific node in an XML document.
OpenSim::ModelComponent::ModelComponent | ( | const ModelComponent & | source | ) |
Construct ModelComponent with its contents copied from another ModelComponent; this is a deep copy so nothing is shared with the source after the copy.
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inlinevirtual |
Destructor is virtual to allow concrete model component cleanup.
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inlineprotected |
Add a state cache entry belonging to this ModelComponent to hold calculated values that must be automatically invalidated when certain state values change.
Cache entries contain values whose computations depend on state variables and provide convenience and/or efficiency by holding on to them in memory (cache) to avoid recomputation. Once the state changes, the cache values automatically become invalid and has to be recomputed based on the current state before it can be referenced again. Any attempt to reference an invalid cache entry results in an exception being thrown.
Cache entry validity is managed by computation Stage, rather than by dependence on individual state variables. Changing a variables whose "invalidates" stage is the same or lower as the one specified as the "depends on" stage here cause the cache entry to be invalidated. For example, a body's momementum, which is dependent on position and velocity states, should have Stage::Velocity as its dependsOnStage. Then if a Velocity stage variable or lower (e.g. Position stage) changes, then the cache is invalidated. But, if a Dynamics stage variable (or above) is changed, the velocity remains valid so the cache entry does not have to be recomputed.
[in] | cacheVariableName | The name you are assigning to this cache entry. Must be unique within this model component. |
[in] | variablePrototype | An object defining the type of value, and a default value of that type, to be held in this cache entry. Can be a simple int or an elaborate class, as long as it has deep copy semantics. |
[in] | dependsOnStage | This is the highest computational stage on which this cache entry's value computation depends. State changes at this level or lower will invalidate the cache entry. |
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protected |
Add a system discrete variable belonging to this ModelComponent, give it a name by which it can be referenced, and declare the lowest Stage that should be invalidated if this variable's value is changed.
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Add a modeling option (integer flag stored in the State) for use by this ModelComponent.
Each modeling option is identified by its own optionName, specified here. Modeling options enable the model component to be configured differently in order to represent different operating modes. For example, if two modes of operation are necessary (mode off and mode on) then specify optionName, "mode" with maxFlagValue = 1. Subsequent gets will return 0 or 1 and set will only accept 0 and 1 as acceptable values. Changing the value of a model option invalidates Stage::Instance and above in the State, meaning all calculations involving time, positions, velocity, and forces are invalidated.
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Add a continuous system state variable belonging to this ModelComponent, and assign a name by which to refer to it.
Changing the value of this state variable will automatically invalidate everything at and above its invalidatesStage, which is normally Stage::Dynamics meaning that there are forces that depend on this variable. If you define one or more of these variables you must also override computeStateVariableDerivatives() to provide time derivatives for them.
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Add appropriate Simbody elements (if needed) to the System corresponding to this component and specify needed state resources.
addToSystem() is called when the Simbody System is being created to represent a completed Model for computation. That is, connectToModel() will already have been invoked on all components before any addToSystem() call is made. Helper methods for adding modeling options, state variables and their derivatives, discrete variables, and cache entries are available and can be called within addToSystem() only.
Note that this method is const; you must not modify your model component or the containing model during this call. Any modifications you need should instead be performed in connectToModel(), which is non-const. One exception is that you may need to record access information for resources you create in the system, such as an index number. You should declare those data members mutable so that you can set them here.
If you override this method, be sure to invoke the base class method first, using code like this:
[in,out] | system | The System being created. |
Reimplemented in OpenSim::Model, OpenSim::Millard2012AccelerationMuscle, OpenSim::Millard2012EquilibriumMuscle, OpenSim::Muscle, OpenSim::Thelen2003Muscle, OpenSim::Coordinate, OpenSim::Joint, OpenSim::CMC, OpenSim::Actuator, OpenSim::CoordinateLimitForce, OpenSim::Probe, OpenSim::GeometryPath, OpenSim::ExpressionBasedPointToPointForce, OpenSim::ContDerivMuscle_Deprecated, OpenSim::PathSpring, OpenSim::Body, OpenSim::Delp1990Muscle_Deprecated, OpenSim::ActivationFiberLengthMuscle_Deprecated, OpenSim::Ligament, OpenSim::CorrectionController, OpenSim::ActivationFiberLengthMuscle, OpenSim::Force, OpenSim::PointToPointSpring, OpenSim::ClutchedPathSpring, OpenSim::Controller, OpenSim::ControlSetController, OpenSim::HuntCrossleyForce, OpenSim::SpringGeneralizedForce, OpenSim::CoordinateCouplerConstraint, OpenSim::RollingOnSurfaceConstraint, OpenSim::WeldConstraint, OpenSim::ConstantDistanceConstraint, OpenSim::PointConstraint, OpenSim::PointOnLineConstraint, OpenSim::EllipsoidJoint, OpenSim::Actuator_, OpenSim::BallJoint, OpenSim::GimbalJoint, OpenSim::FreeJoint, OpenSim::UniversalJoint, OpenSim::PinJoint, OpenSim::WeldJoint, OpenSim::PlanarJoint, OpenSim::SliderJoint, and OpenSim::ElasticFoundationForce.
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If a model component has allocated any continuous state variables using the addStateVariable() method, then computeStateVariableDerivatives() must be implemented to provide time derivatives for those states.
Override to return a Vector of the same size as the number of state variables defined and in order added to the system (also
Reimplemented in OpenSim::Millard2012AccelerationMuscle, OpenSim::Model, OpenSim::Millard2012EquilibriumMuscle, OpenSim::ContDerivMuscle_Deprecated, OpenSim::ActivationFiberLengthMuscle_Deprecated, OpenSim::Delp1990Muscle_Deprecated, OpenSim::ActivationFiberLengthMuscle, and OpenSim::ClutchedPathSpring.
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Perform any necessary initializations required to connect the component into the Model, and check for error conditions.
connectToModel() is invoked on all components to complete construction of a Model, prior to creating a Simbody System to represent it computationally. It may also be invoked at times just for its error-checking side effects.
If you override this method, be sure to invoke the base class method first, using code like this:
Note that this method is expected to check for modeling errors and should throw an OpenSim::Exception if there is something wrong. For example, if your model component references another object by name, you should verify that it exists in the supplied Model, which is not guaranteed since components may be independently instantiated or constructed from XML files.
[in,out] | model | The Model currently being constructed to which this ModelComponent should be connected. |
Reimplemented in OpenSim::Model, OpenSim::Millard2012AccelerationMuscle, OpenSim::Millard2012EquilibriumMuscle, OpenSim::Muscle, OpenSim::Thelen2003Muscle, OpenSim::PrescribedForce, OpenSim::Coordinate, OpenSim::Joint, OpenSim::CMC, OpenSim::CoordinateLimitForce, OpenSim::ExternalForce, OpenSim::Probe, OpenSim::GeometryPath, OpenSim::ExpressionBasedPointToPointForce, OpenSim::ContDerivMuscle_Deprecated, OpenSim::ContactGeometry, OpenSim::PathSpring, OpenSim::Body, OpenSim::PathActuator, OpenSim::Delp1990Muscle_Deprecated, OpenSim::Ligament, OpenSim::ActivationFiberLengthMuscle, OpenSim::CorrectionController, OpenSim::ActuatorPowerProbe, OpenSim::PointToPointSpring, OpenSim::ActuatorForceProbe, OpenSim::PrescribedController, OpenSim::Schutte1993Muscle_Deprecated, OpenSim::ControlSetController, OpenSim::Controller, OpenSim::SpringGeneralizedForce, OpenSim::CoordinateCouplerConstraint, OpenSim::RollingOnSurfaceConstraint, OpenSim::WeldConstraint, OpenSim::ConstantDistanceConstraint, OpenSim::Constraint, OpenSim::PointConstraint, OpenSim::UnilateralConstraint, OpenSim::EllipsoidJoint, OpenSim::PointOnLineConstraint, OpenSim::BallJoint, OpenSim::GimbalJoint, OpenSim::FreeJoint, OpenSim::UniversalJoint, OpenSim::PinJoint, OpenSim::WeldJoint, OpenSim::PlanarJoint, and OpenSim::SliderJoint.
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Optional method for generating arbitrary display geometry that reflects this ModelComponent at the specified state.
This will be called once to obtain ground- and body-fixed geometry (with fixed=true
), and then once per frame (with fixed=false
) to generate on-the-fly geometry such as rubber band lines, force arrows, labels, or debugging aids.
If you override this method, be sure to invoke the base class method first, using code like this:
[in] | fixed | If true , generate only geometry that is independent of time, configuration, and velocity. Otherwise generate only such dependent geometry. |
[in] | hints | See documentation for ModelDisplayHints; you may want to alter the geometry you generate depending on what you find there. For example, you can determine whether the user wants to see debug geometry. |
[in] | state | The State for which geometry should be produced. See below for more information. |
[in,out] | appendToThis | Array to which generated geometry should be appended via the push_back() method. |
When called with fixed=true
only modeling options and parameters (Instance variables) should affect geometry; time, position, and velocity should not. In that case OpenSim will already have realized the state through Instance stage. When called with fixed=false
, you may consult any relevant value in state. However, to avoid unnecessary computation, OpenSim guarantees only that state will have been realized through Position stage; if you need anything higher than that (reaction forces, for example) you should make sure the state is realized through Acceleration stage.
Reimplemented in OpenSim::Model, OpenSim::ExpressionBasedBushingForce, OpenSim::FunctionBasedBushingForce, OpenSim::GeometryPath, and OpenSim::EllipsoidJoint.
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Get the value of a cache variable allocated by this ModelComponent by name.
state | the State for which to set the value |
name | the name of the cache variable |
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Get the index of a ModelComponent's cache variable in the Subsystem for allocations.
This method is intended for derived ModelComponents that may need direct access to its underlying Subsystem.
double OpenSim::ModelComponent::getDiscreteVariable | ( | const SimTK::State & | state, |
const std::string & | name | ||
) | const |
Get the value of a discrete variable allocated by this ModelComponent by name.
state | the State for which to set the value |
name | the name of the state variable |
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Get the index of a ModelComponent's discrete variable in the Subsystem for allocations.
This method is intended for derived ModelComponents that may need direct access to its underlying Subsystem.
const Model& OpenSim::ModelComponent::getModel | ( | ) | const |
Get a const reference to the Model this component is part of.
int OpenSim::ModelComponent::getModelingOption | ( | const SimTK::State & | state, |
const std::string & | name | ||
) | const |
Get a ModelingOption flag for this ModelComponent by name.
The flag is an integer corresponding to the index of modelingOptionNames used add the modeling option to the component.
state | the State in which to set the modeling option |
name | the name (string) of the modeling option of interest |
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Get the number of "Continuous" state variables maintained by the ModelComponent and its specified subcomponents.
Reimplemented in OpenSim::Model, OpenSim::Coordinate, OpenSim::Body, and OpenSim::Constraint.
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Get the index of a ModelComponent's continuous state variable in the Subsystem for allocations.
This method is intended for derived ModelComponents that may need direct access to its underlying Subsystem.
double OpenSim::ModelComponent::getStateVariable | ( | const SimTK::State & | state, |
const std::string & | name | ||
) | const |
Get the value of a state variable allocated by this ModelComponent.
state | the State for which to get the value |
name | the name (string) of the state variable of interest |
Reimplemented in OpenSim::Model.
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Get the names of "continuous" state variables maintained by the ModelComponent and its subcomponents.
Reimplemented in OpenSim::Model, OpenSim::Millard2012AccelerationMuscle, OpenSim::Millard2012EquilibriumMuscle, OpenSim::Coordinate, OpenSim::ActivationFiberLengthMuscle_Deprecated, and OpenSim::ActivationFiberLengthMuscle.
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Get the System Index of a state variable allocated by this ModelComponent.
Returns an InvalidIndex if no state variable with the name provided is found.
stateVariableName | the name of the state variable |
Reimplemented in OpenSim::Model, OpenSim::Millard2012AccelerationMuscle, OpenSim::Millard2012EquilibriumMuscle, OpenSim::Coordinate, OpenSim::ActivationFiberLengthMuscle_Deprecated, and OpenSim::ActivationFiberLengthMuscle.
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Include another ModelComponent as a Subcomponent of this ModelComponent.
ModelComponent methods (e.g. addToSystem(), initStateFromProperties(), ...) are therefore invoked on Subcomponents when called on the parent. Realization is also performed automatically on subcomponents. This ModelComponent does not take ownership of the subcomponent.
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Transfer property values or other state-independent initial values into this component's state variables in the passed-in state argument.
This is called after a SimTK::System and State have been created for the Model (that is, after addToSystem() has been called on all components). You should override this method if your component has properties (serializable values) that can affect initial values for your state variables. You can also perform any other state-independent calculations here that result in state initial conditions.
If you override this method, be sure to invoke the base class method first, using code like this:
state | The state that will receive the new initial conditions. |
Reimplemented in OpenSim::Model, OpenSim::Millard2012AccelerationMuscle, OpenSim::Millard2012EquilibriumMuscle, OpenSim::Muscle, OpenSim::Thelen2003Muscle, OpenSim::Coordinate, OpenSim::Joint, OpenSim::GeometryPath, OpenSim::PathSpring, OpenSim::ActivationFiberLengthMuscle_Deprecated, OpenSim::CorrectionController, OpenSim::ActivationFiberLengthMuscle, OpenSim::ControlSetController, OpenSim::Force, OpenSim::RollingOnSurfaceConstraint, OpenSim::Constraint, OpenSim::EllipsoidJoint, OpenSim::BallJoint, OpenSim::GimbalJoint, and OpenSim::FreeJoint.
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Enables the to monitor the validity of the cache variable value using the returned flag.
For components performing a costly evaluation, use this method to force a re-evaluation cache variable value only when necessary (returns false).
state | the State in which the cache value resides |
name | the name of the cache variable |
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Mark a cache variable value allocated by this ModelComponent as invalid.
When the system realization drops to below the lowest valid stage, cache variables are automatically marked as invalid. There are instances when component added state variables require invalidating a cache at a lower stage. For example, a component may have a length state variable which should invalidate calculations involving it and other positions when the state variable is set. Changing the component state variable automatically invalidates Dynamics and higher realizations, but to force realizations at Position and Velocity requires setting the lowest valid stage to Position and marking the cache variable as invalid whenver the length state variable value is set/changed.
state | the State containing the cache variable |
name | the name of the cache variable |
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After updating a cache variable value allocated by this ModelComponent, you can mark its value as valid, which will not change until the realization stage falls below the minimum set at the time the cache variable was created.
If not marked as valid, the evaluation method monitoring this flag will force a re-evaluation rather that just reading the value from the cache.
state | the State containing the cache variable |
name | the name of the cache variable |
ModelComponent& OpenSim::ModelComponent::operator= | ( | const ModelComponent & | aModelComponent | ) |
Assignment operator to copy contents of an existing component.
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Perform computations that may depend on applied forces.
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Perform computations (typically forces) that may depend on dynamics-stage state variables, and on computations performed in earlier stages (including velocity, position, and time), but not on other forces, accelerations, constraint multipliers, or reaction forces.
Reimplemented in OpenSim::PathActuator, and OpenSim::Ligament.
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Perform computations that depend only on instance variables, like lengths and masses.
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Obtain state resources that may be needed, depending on modeling options, and perform computations that depend only on topology and selected modeling options.
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Perform computations that depend only on position-level state variables and computations performed in earlier stages (including time).
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Perform computations that may depend on anything but are only used for reporting and cannot affect subsequent simulation behavior.
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Perform computations that depend only on time and earlier stages.
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Obtain state resources that are needed unconditionally, and perform computations that depend only on the system topology.
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Perform computations that depend only on velocity-level state variables and computations performed in earlier stages (including position, and time).
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Set cache variable value allocated by this ModelComponent by name.
All cache entries are lazily evaluated (on a need basis) so a set also marks the cache as valid.
state | the State in which to store the new value |
name | the name of the cache variable |
value | the new value for this cache variable |
void OpenSim::ModelComponent::setDiscreteVariable | ( | SimTK::State & | state, |
const std::string & | name, | ||
double | value | ||
) | const |
Set the value of a discrete variable allocated by this ModelComponent by name.
state | the State for which to set the value |
name | the name of the dsicrete variable |
value | the value to set |
void OpenSim::ModelComponent::setModelingOption | ( | SimTK::State & | state, |
const std::string & | name, | ||
int | flag | ||
) | const |
Set the value of a ModelingOption flag for this ModelComponent.
if the integer value exceeds the number of option names used to define the options, an exception is thrown. The SimTK::State Stage will be reverted back to Stage::Instance.
state | the State in which to set the flag |
name | the name (string) of the modeling option of interest |
flag | the desired flag (integer) value specifying the modeling option |
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Update this component's property values to match the specified State, if the component has created any state variable that is intended to correspond to a property.
Thus, state variable values can persist as part of the model component and be serialized as a property.
If you override this method, be sure to invoke the base class method first, using code like this:
state | The State from which values may be extracted to set persistent property values. |
Reimplemented in OpenSim::Model, OpenSim::Millard2012AccelerationMuscle, OpenSim::Millard2012EquilibriumMuscle, OpenSim::Muscle, OpenSim::Thelen2003Muscle, OpenSim::Coordinate, OpenSim::Joint, OpenSim::ActivationFiberLengthMuscle_Deprecated, OpenSim::Force, OpenSim::ActivationFiberLengthMuscle, OpenSim::RollingOnSurfaceConstraint, OpenSim::Constraint, OpenSim::EllipsoidJoint, OpenSim::BallJoint, OpenSim::GimbalJoint, and OpenSim::FreeJoint.
void OpenSim::ModelComponent::setStateVariable | ( | SimTK::State & | state, |
const std::string & | name, | ||
double | value | ||
) | const |
Set the value of a state variable allocated by this ModelComponent by name.
state | the State for which to set the value |
name | the name of the state variable |
value | the value to set |
Reimplemented in OpenSim::Model.
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In case the ModelComponent has a visual representation (VisualObject), override this method to update it.
This is typically done by recomputing anchor points and positions based on transforms obtained from current state.
Reimplemented in OpenSim::PathSpring, OpenSim::GeometryPath, OpenSim::PathActuator, and OpenSim::Ligament.
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Obtain a writable cache variable value allocated by this ModelComponent by name.
Do not forget to mark the cache value as valid after updating, otherwise it will force a reevaluation if the evaluation method is monitoring the validity of the cache value.
state | the State for which to set the value |
name | the name of the state variable |
Model& OpenSim::ModelComponent::updModel | ( | ) |
Get a modifiable reference to the Model this component is part of.
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friend |
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The model this component belongs to.