An abstract class for specifying the interface for an investigation. More...

#include <AnalyzeTool.h>

Inheritance diagram for OpenSim::AnalyzeTool:

Public Member Functions
virtual	~AnalyzeTool ()

	AnalyzeTool ()

	AnalyzeTool (const std::string &aFileName, bool aLoadModelAndInput=true) SWIG_DECLARE_EXCEPTION

	AnalyzeTool (const AnalyzeTool &aObject)

	AnalyzeTool (Model &aModel)

AnalyzeTool &	operator= (const AnalyzeTool &aAnalyzeTool)

void	setStatesStorage (Storage &aStore)

Storage &	getStatesStorage ()

const std::string &	getStatesFileName () const

void	setStatesFileName (const std::string &aFileName)

const std::string &	getCoordinatesFileName () const

void	setCoordinatesFileName (const std::string &aFileName)

const std::string &	getSpeedsFileName () const

void	setSpeedsFileName (const std::string &aFileName)

double	getLowpassCutoffFrequency () const

void	setLowpassCutoffFrequency (double aLowpassCutoffFrequency)

const bool	getLoadModelAndInput () const

void	setLoadModelAndInput (bool b)

void	setStatesFromMotion (const SimTK::State &s, const Storage &aMotion, bool aInDegrees) SWIG_DECLARE_EXCEPTION

void	loadStatesFromFile (SimTK::State &s) SWIG_DECLARE_EXCEPTION

void	verifyControlsStates ()

void	setPrintResultFiles (bool aToWrite)

void	disableIntegrationOnlyProbes ()

virtual bool	run () SWIG_DECLARE_EXCEPTION

virtual bool	run (bool plotting) SWIG_DECLARE_EXCEPTION

Public Member Functions inherited from OpenSim::AbstractTool
virtual	~AbstractTool ()
	Destructor. More...

	AbstractTool ()
	Default constructor. More...

	AbstractTool (const std::string &aFileName, bool aUpdateFromXMLNode=true)
	Construct from file, and an optional GuiModel. More...

	AbstractTool (const AbstractTool &aObject)
	Copy constructor. More...

AbstractTool &	operator= (const AbstractTool &aTool)
	Assignment operator. More...

virtual void	setModel (Model &aModel) SWIG_DECLARE_EXCEPTION
	Set the model to be investigated. More...

virtual Model &	getModel () const
	Get the model to be investigated. More...

bool	getReplaceForceSet () const

void	setReplaceForceSet (bool aReplace)

std::string	getNextAvailableForceName (const std::string prefix="Force") const

const ExternalLoads &	getExternalLoads () const

ExternalLoads &	updExternalLoads ()

void	setExternalLoads (ExternalLoads &el)

const std::string &	getExternalLoadsFileName () const

void	setExternalLoadsFileName (const std::string &aFileName)

Array< std::string > &	getForceSetFiles ()

void	setForceSetFiles (const Array< std::string > &aForceSetFiles)

int	getOutputPrecision () const

void	setOutputPrecision (int aPrecision)

AnalysisSet &	getAnalysisSet () const

const std::string &	getResultsDir () const
	Get Results Directory. More...

void	setResultsDir (const std::string &aString)

double	getInitialTime () const

double	getFinalTime () const

void	setInitialTime (const double aInitialTime)

void	setFinalTime (const double aFinalTime)

double	getStartTime () const

void	setStartTime (const double aStartTime)

int	getMaximumNumberOfSteps () const

void	setMaximumNumberOfSteps (int aMaxSteps)

double	getMaxDT () const

void	setMaxDT (double aMaxDT)

double	getMinDT () const

void	setMinDT (double aMinDT)

double	getErrorTolerance () const

void	setErrorTolerance (double aErrorTolerance)

const std::string &	getModelFilename () const

void	setModelFilename (const std::string &aModelFile)

bool	getSolveForEquilibrium () const

void	setSolveForEquilibrium (bool aSolve)

void	loadModel (const std::string &aToolSetupFileName, ForceSet *rOriginalForceSet=0)
	Load and construct a model based on the property settings of this investigation. More...

void	updateModelForces (Model &model, const std::string &aToolSetupFileName, ForceSet *rOriginalForceSet=0) SWIG_DECLARE_EXCEPTION
	Update the forces applied to a model. More...

void	addAnalysisSetToModel ()
	Adds Analysis objects from analysis set to model. More...

void	addControllerSetToModel ()

void	removeControllerSetFromModel ()
	Remove Analysis objects that were added earlier from analysis set to model. More...

void	removeAnalysisSetFromModel ()

void	setToolOwnsModel (const bool trueFalse)

const bool	getToolOwnsModel () const

std::string	getControlsFileName () const

void	setControlsFileName (const std::string &controlsFilename)

virtual void	printResults (const std::string &aBaseName, const std::string &aDir="", double aDT=-1.0, const std::string &aExtension=".sto")
	Print the results of the analysis. More...

bool	createExternalLoads (const std::string &aExternalLoadsFileName, Model &aModel, const Storage *loadKinematics=NULL)

virtual void	updateFromXMLNode (SimTK::Xml::Element &aNode, int versionNumber)
	Use this method to deserialize an object from a SimTK::Xml::Element. More...

virtual void	loadQStorage (const std::string &statesFileName, Storage &rQStore) const

Public Member Functions inherited from OpenSim::Object
virtual	~Object ()
	Virtual destructor for cleanup. More...

virtual Object *	clone () const =0
	Create a new heap-allocated copy of the concrete object to which this Object refers. More...

virtual const std::string &	getConcreteClassName () const =0
	Returns the class name of the concrete Object-derived class of the actual object referenced by this Object, as a string. More...

virtual const VisibleObject *	getDisplayer () const
	Methods to support making the object displayable in the GUI or Visualizer Implemented only in few objects. More...

virtual VisibleObject *	updDisplayer ()
	get Non const pointer to VisibleObject More...

bool	isEqualTo (const Object &aObject) const
	Equality operator wrapper for use from languages not supporting operator overloading. More...

Object &	operator= (const Object &aObject)
	Copy assignment copies he base class fields, including the properties. More...

virtual bool	operator== (const Object &aObject) const
	Determine if two objects are equal. More...

virtual bool	operator< (const Object &aObject) const
	Provide an ordering for objects so they can be put in sorted containers. More...

void	setName (const std::string &name)
	Set the name of the Object. More...

const std::string &	getName () const
	Get the name of this Object. More...

void	setDescription (const std::string &description)
	Set description, a one-liner summary. More...

const std::string &	getDescription () const
	Get description, a one-liner summary. More...

const std::string &	getAuthors () const
	Get Authors of this Object. More...

void	setAuthors (const std::string &authors)
	Set Authors of this object, call this method in your constructor if needed. More...

const std::string &	getReferences () const
	Get references or publications to cite if using this object. More...

void	setReferences (const std::string &references)
	Set references or publications to cite if using this object. More...

int	getNumProperties () const
	Determine how many properties are stored with this Object. More...

const AbstractProperty &	getPropertyByIndex (int propertyIndex) const
	Get a const reference to a property by its index number, returned as an AbstractProperty. More...

AbstractProperty &	updPropertyByIndex (int propertyIndex)
	Get a writable reference to a property by its index number, returned as an AbstractProperty. More...

bool	hasProperty (const std::string &name) const
	Return true if this Object has a property of any type with the given name, which must not be empty. More...

const AbstractProperty &	getPropertyByName (const std::string &name) const
	Get a const reference to a property by its name, returned as an AbstractProperty. More...

AbstractProperty &	updPropertyByName (const std::string &name)
	Get a writable reference to a property by its name, returned as an AbstractProperty. More...

template<class T >
bool	hasProperty () const
	Return true if this Object contains an unnamed, one-object property that contains objects of the given template type T. More...

template<class T >
const Property< T > &	getProperty (const PropertyIndex &index) const
	Get property of known type Property<T> as a const reference; the property must be present and have the right type. More...

template<class T >
Property< T > &	updProperty (const PropertyIndex &index)
	Get property of known type Property<T> as a writable reference; the property must be present and have the right type. More...

void	setObjectIsUpToDateWithProperties ()
	When an object is initialized using the current values of its properties, it can set a flag indicating that it is up to date. More...

bool	isObjectUpToDateWithProperties () const
	Returns `true` if no property's value has changed since the last time setObjectIsUpToDateWithProperties() was called. More...

void	readObjectFromXMLNodeOrFile (SimTK::Xml::Element &objectElement, int versionNumber)
	We're given an XML element from which we are to populate this Object. More...

virtual void	updateXMLNode (SimTK::Xml::Element &parent)
	Serialize this object into the XML node that represents it. More...

bool	getInlined () const
	Inlined means an in-memory Object that is not associated with an XMLDocument. More...

void	setInlined (bool aInlined, const std::string &aFileName="")
	Mark this as inlined or not and optionally provide a file name to associate with the new XMLDocument for the non-inline case. More...

std::string	getDocumentFileName () const
	If there is a document associated with this object then return the file name maintained by the document. More...

void	setAllPropertiesUseDefault (bool aUseDefault)

bool	print (const std::string &fileName)
	Write this Object into an XML file of the given name; conventionally the suffix to use is ".osim". More...

std::string	dump (bool dumpName=false)
	dump the XML representation of this Object into an std::string and return it. More...

void	clearObjectIsUpToDateWithProperties ()
	For testing or debugging purposes, manually clear the "object is up to date with respect to properties" flag. More...

virtual bool	isA (const char *type) const
	The default implementation returns true only if the supplied string is "Object"; each Object-derived class overrides this to match its own class name. More...

const std::string &	toString () const
	Wrapper to be used on Java side to display objects in tree; this returns just the object's name. More...

PropertySet &	getPropertySet ()
	OBSOLETE: Get a reference to the PropertySet maintained by the Object. More...

const PropertySet &	getPropertySet () const

Static Public Member Functions
static Storage *	createStatesStorageFromCoordinatesAndSpeeds (const Model &aModel, const Storage &aQStore, const Storage &aUStore)

static void	run (SimTK::State &s, Model &aModel, int iInitial, int iFinal, const Storage &aStatesStore, bool aSolveForEquilibrium)

Additional Inherited Members
Static Public Attributes inherited from OpenSim::Object
static const std::string	DEFAULT_NAME
	Name used for default objects when they are serialized. More...

Protected Member Functions inherited from OpenSim::Object
	Object ()
	The default constructor is only for use by constructors of derived types. More...

	Object (const std::string &fileName, bool aUpdateFromXMLNode=true) SWIG_DECLARE_EXCEPTION
	Constructor from a file, to be called from other constructors that take a file as input. More...

	Object (const Object &source)
	Copy constructor is invoked automatically by derived classes with default copy constructors; otherwise it must be invoked explicitly. More...

	Object (SimTK::Xml::Element &aElement)
	Construct the base class portion of an Object from a given Xml element that describes this Object. More...

template<class T >
PropertyIndex	addProperty (const std::string &name, const std::string &comment, const T &value)
	Define a new single-value property of known type T, with the given name, associated comment, and initial value. More...

template<class T >
PropertyIndex	addOptionalProperty (const std::string &name, const std::string &comment)
	Add an optional property, meaning it can contain either no value or a single value. More...

template<class T >
PropertyIndex	addOptionalProperty (const std::string &name, const std::string &comment, const T &value)
	Add an optional property, meaning it can contain either no value or a single value. More...

template<class T >
PropertyIndex	addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize)
	Define a new list-valued property of known type T, with the given name, associated comment, minimum (==0) and maximum (>0) allowable list lengths, and a zero-length initial value. More...

template<class T , template< class > class Container>
PropertyIndex	addListProperty (const std::string &name, const std::string &comment, int minSize, int maxSize, const Container< T > &valueList)
	Define a new list-valued property as above, but assigning an initial value via some templatized container class that supports size() and indexing. More...

PropertyIndex	getPropertyIndex (const std::string &name) const
	Look up a property by name and return its PropertyIndex if it is found. More...

template<class T >
PropertyIndex	getPropertyIndex () const
	Look up an unnamed property by the type of object it contains, and return its PropertyIndex if it is found. More...

void	updateFromXMLDocument ()
	Use this method only if you're deserializing from a file and the object is at the top level; that is, primarily in constructors that take a file name as input. More...

void	setDocument (XMLDocument *doc)
	Unconditionally set the XMLDocument associated with this object. More...

const XMLDocument *	getDocument () const
	Get a const pointer to the document (if any) associated with this object. More...

XMLDocument *	updDocument ()
	Get a writable pointer to the document (if any) associated with this object. More...

Protected Attributes inherited from OpenSim::AbstractTool
Model *	_model
	Pointer to the model being investigated. More...

PropertyStr	_modelFileProp
	Name of the xml file used to deserialize or construct a model. More...

std::string &	_modelFile

PropertyBool	_replaceForceSetProp
	Whether the force set included in the model file is replaced (if true) or appended to (if false) with force sets read in from file. More...

bool &	_replaceForceSet

PropertyStrArray	_forceSetFilesProp
	Names of the xml files used to construct an force set for the model. More...

Array< std::string > &	_forceSetFiles

PropertyStr	_resultsDirProp
	Directory used for writing results. More...

std::string &	_resultsDir

PropertyInt	_outputPrecisionProp
	Output precision. More...

int &	_outputPrecision

PropertyDbl	_tiProp
	Initial time for the investigation. More...

double &	_ti

PropertyDbl	_tfProp
	Final time for the investigation. More...

double &	_tf

OpenSim::PropertyBool	_solveForEquilibriumForAuxiliaryStatesProp
	A flag used to specify whether or not equilibrium is solved for for the auxiliary states. More...

bool &	_solveForEquilibriumForAuxiliaryStates

PropertyInt	_maxStepsProp
	Maximum number of steps for the integrator. More...

int &	_maxSteps

PropertyDbl	_maxDTProp
	Maximum integration step size. More...

double &	_maxDT

PropertyDbl	_minDTProp
	Minimum integration step size. More...

double &	_minDT

PropertyDbl	_errorToleranceProp
	Integrator error tolerance. More...

double &	_errorTolerance

PropertyObj	_analysisSetProp
	Set of analyses to be run during the study. More...

AnalysisSet &	_analysisSet

PropertyObj	_controllerSetProp

ControllerSet &	_controllerSet

bool	_toolOwnsModel
	Whether the tool owns the model it operates on. More...

OpenSim::PropertyStr	_externalLoadsFileNameProp
	Name of the file containing the external loads applied to the model. More...

std::string &	_externalLoadsFileName

ExternalLoads	_externalLoads
	Actual external forces being applied. More...

Related Functions inherited from OpenSim::Object
#define	OpenSim_DECLARE_CONCRETE_OBJECT(ConcreteClass, SuperClass)
	Macro to be included as the first line of the class declaration for any non-templatized, concrete class that derives from OpenSim::Object. More...

#define	OpenSim_DECLARE_ABSTRACT_OBJECT(ConcreteClass, SuperClass)
	Macro to be included as the first line of the class declaration for any still-abstract class that derives from OpenSim::Object. More...

#define	OpenSim_DECLARE_CONCRETE_OBJECT_T(ConcreteClass, TArg, SuperClass)
	Macro to be included as the first line of the class declaration for any templatized, concrete class that derives from OpenSim::Object, like Set<T>. More...

#define	OpenSim_DECLARE_ABSTRACT_OBJECT_T(ConcreteClass, TArg, SuperClass)
	Macro to be included as the first line of the class declaration for any templatized, still-abstract class that derives from OpenSim::Object. More...

Detailed Description

An abstract class for specifying the interface for an investigation.

Author: Frank C. Anderson

Version: 1.0

Constructor & Destructor Documentation

virtual OpenSim::AnalyzeTool::~AnalyzeTool ( )

virtual

OpenSim::AnalyzeTool::AnalyzeTool ( )

OpenSim::AnalyzeTool::AnalyzeTool	(	const std::string &	aFileName,
		bool	aLoadModelAndInput = `true`
	)

OpenSim::AnalyzeTool::AnalyzeTool ( const AnalyzeTool & aObject)

OpenSim::AnalyzeTool::AnalyzeTool ( Model & aModel)

explicit

Member Function Documentation

static Storage* OpenSim::AnalyzeTool::createStatesStorageFromCoordinatesAndSpeeds	(	const Model &	aModel,
		const Storage &	aQStore,
		const Storage &	aUStore
	)

static

void OpenSim::AnalyzeTool::disableIntegrationOnlyProbes ( )

const std::string& OpenSim::AnalyzeTool::getCoordinatesFileName ( ) const

inline

const bool OpenSim::AnalyzeTool::getLoadModelAndInput ( ) const

inline

double OpenSim::AnalyzeTool::getLowpassCutoffFrequency ( ) const

inline

const std::string& OpenSim::AnalyzeTool::getSpeedsFileName ( ) const

inline

const std::string& OpenSim::AnalyzeTool::getStatesFileName ( ) const

inline

Storage& OpenSim::AnalyzeTool::getStatesStorage ( )

void OpenSim::AnalyzeTool::loadStatesFromFile ( SimTK::State & s)

AnalyzeTool& OpenSim::AnalyzeTool::operator= ( const AnalyzeTool & aAnalyzeTool)

virtual bool OpenSim::AnalyzeTool::run ( )

virtual

Implements OpenSim::AbstractTool.

virtual bool OpenSim::AnalyzeTool::run ( bool plotting)

virtual

static void OpenSim::AnalyzeTool::run	(	SimTK::State &	s,
		Model &	aModel,
		int	iInitial,
		int	iFinal,
		const Storage &	aStatesStore,
		bool	aSolveForEquilibrium
	)

static

void OpenSim::AnalyzeTool::setCoordinatesFileName ( const std::string & aFileName)

inline

void OpenSim::AnalyzeTool::setLoadModelAndInput ( bool b)

inline

void OpenSim::AnalyzeTool::setLowpassCutoffFrequency ( double aLowpassCutoffFrequency)

inline

void OpenSim::AnalyzeTool::setPrintResultFiles ( bool aToWrite)

void OpenSim::AnalyzeTool::setSpeedsFileName ( const std::string & aFileName)

inline

void OpenSim::AnalyzeTool::setStatesFileName ( const std::string & aFileName)

inline

void OpenSim::AnalyzeTool::setStatesFromMotion	(	const SimTK::State &	s,
		const Storage &	aMotion,
		bool	aInDegrees
	)

void OpenSim::AnalyzeTool::setStatesStorage ( Storage & aStore)

void OpenSim::AnalyzeTool::verifyControlsStates ( )

The documentation for this class was generated from the following file:

/home/fitze/repos/opensim/Branches/OpenSim32ForDoxygen/OpenSim/Tools/AnalyzeTool.h

Public Member Functions

Static Public Member Functions

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation