Here is a list of all class members with links to the classes they belong to:

- r -

• r : SpbcgMemRec , SptfqmrMemRec
• R() : Transform , InverseTransform , PbData
• r_star : SpbcgMemRec , SptfqmrMemRec
• Radium() : Element::Radium
• Radon() : Element::Radon
• Random() : Random
• RangeType : Parallel2DExecutor
• rates : UserData
• ReachedEventTrigger : Integrator
• ReachedFinalTime : Integrator
• ReachedReportTime : Integrator
• ReachedScheduledEvent : Integrator
• ReachedStepLimit : Integrator
• ReadFromStream() : OptionsList
• readOnlyViewAssign() : MatrixHelper
• real() : NTraits< conjugate< R > > , Mat , Row , SymMat , CNT , Vec , CNT , conjugate< float > , conjugate< double > , conjugate< long double > , negator , NTraits< complex< R > >
• realize() : System::Guts
• realizeAcceleration() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeAccelerationErrors() : Constraint::Custom::Implementation
• realizeAccelerationImpl() : System::Guts
• RealizeCheckFailed() : RealizeCheckFailed
• realizeDynamics() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeDynamicsImpl() : System::Guts
• realizeInstance() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeInstanceImpl() : System::Guts
• realizeModel() : SimbodyMatterSubtreeResults , System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeModelImpl() : System::Guts
• realizePosition() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizePositionDotDotErrors() : Constraint::Custom::Implementation
• realizePositionDotErrors() : Constraint::Custom::Implementation
• realizePositionErrors() : Constraint::Custom::Implementation
• realizePositionImpl() : System::Guts
• realizeReport() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeReportImpl() : System::Guts
• realizeSubsystemAcceleration() : Subsystem::Guts
• realizeSubsystemAccelerationImpl() : Subsystem::Guts
• realizeSubsystemDynamics() : Subsystem::Guts
• realizeSubsystemDynamicsImpl() : Subsystem::Guts
• realizeSubsystemInstance() : Subsystem::Guts
• realizeSubsystemInstanceImpl() : Subsystem::Guts
• realizeSubsystemModel() : Subsystem::Guts
• realizeSubsystemModelImpl() : Subsystem::Guts
• realizeSubsystemPosition() : Subsystem::Guts
• realizeSubsystemPositionImpl() : Subsystem::Guts
• realizeSubsystemReport() : Subsystem::Guts
• realizeSubsystemReportImpl() : Subsystem::Guts
• realizeSubsystemTime() : Subsystem::Guts
• realizeSubsystemTimeImpl() : Subsystem::Guts
• realizeSubsystemTopology() : Subsystem::Guts
• realizeSubsystemTopologyImpl() : Subsystem::Guts
• realizeSubsystemVelocity() : Subsystem::Guts
• realizeSubsystemVelocityImpl() : Subsystem::Guts
• realizeTime() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeTimeImpl() : System::Guts
• realizeTopology() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation , SimbodyMatterSubtree
• realizeTopologyImpl() : System::Guts
• RealizeTopologyMustBeCalledFirst() : RealizeTopologyMustBeCalledFirst
• realizeVelocity() : System::Guts , Constraint::Custom::Implementation , Force::Custom::Implementation , MobilizedBody::Custom::Implementation
• realizeVelocityDotErrors() : Constraint::Custom::Implementation
• realizeVelocityErrors() : Constraint::Custom::Implementation
• realizeVelocityImpl() : System::Guts
• reallocateBodies() : SimbodyMatterSubtreeResults
• RealStrideFactor : CNT , negator , NTraits< complex< R > > , NTraits< conjugate< R > > , Mat , Row , SymMat , Vec
• recast() : negator
• RecieveNotification() : DependentResult , Observer
• RecoverableError : CPodes
• ReducedDiag() : LowRankUpdateSymMatrix , LowRankUpdateSymMatrixSpace
• reexpress() : Inertia , MassProperties
• reference : VectorIterator , ArrayBase
• referenceAssign() : PIMPLHandle
• referenceCount : Spline::SplineImpl , SplineFitter::SplineFitterImpl , ContactImpl
• ReferenceCount() : ReferencedObject
• ReferencedObject() : ReferencedObject
• registerAlgorithm() : CollisionDetectionAlgorithm
• RegisteredOption() : RegisteredOption
• RegisteredOptions() : RegisteredOptions
• RegisteringCategory() : RegisteredOption , RegisteredOptions
• RegisterOptions() : AdaptiveMuUpdate , AlgorithmBuilder , BacktrackingLineSearch , BacktrackingLSAcceptor , DefaultIterateInitializer , FilterLSAcceptor , GradientScaling , IpoptAlgorithm , IpoptApplication , IpoptCalculatedQuantities , IpoptData , LapackSolverInterface , LimMemQuasiNewtonUpdater , MonotoneMuUpdate , StandardScalingBase , OptimalityErrorConvergenceCheck , OrigIpoptNLP , OrigIterationOutput , PDFullSpaceSolver , PDPerturbationHandler , ProbingMuOracle , QualityFunctionMuOracle , RestoFilterConvergenceCheck , RestoIpoptNLP , RestoIterateInitializer , MinC_1NrmRestorationPhase , TNLPAdapter , TSymLinearSolver , WarmStartIterateInitializer
• RegOptions() : IpoptApplication
• reInit() : CPodes
• reinitialize() : Integrator
• ReleaseRef() : ReferencedObject
• removeOwnerHandle() : PIMPLImplementation
• renumberPdbResidues() : Biopolymer
• ReOptimizeNLP() : IpoptApplication
• ReOptimizeTNLP() : IpoptApplication
• rep : Eigen , DecorativeGeometry , MatrixHelper , AnalyticGeometry , Differentiator::Function , FactorLU , FactorQTZ , FactorSVD , Integrator , VTKEventReporter , VTKVisualizer , Body , TextDataEventReporter
• replace() : Concretize
• replaceContiguousData() : MatrixHelper
• replaceContiguousScalarData() : MatrixBase
• replaceOwnerHandle() : PIMPLImplementation
• report() : VTKVisualizer
• Report : Stage
• reportEvents() : Subsystem::Guts , System::Guts
• reportEventsImpl() : System::Guts
• ReportException() : IpoptException
• ReportIndex : Stage
• Representation : DecorativeGeometry
• RequestAttach() : Observer
• RequestDetach() : Observer
• reserve() : ArrayHelper , ArrayBase
• Reset() : FilterLSAcceptor , BacktrackingLineSearch , BacktrackingLSAcceptor , LineSearch , TimedTask
• ResetAdjustedTrialSlacks() : IpoptCalculatedQuantities
• resetAllStatistics() : Differentiator , Differentiator::Function , Integrator
• ResetInfo() : IpoptData
• ResetTimes() : TimingStatistics
• residual : TransformAndResidual
• residueNumber : PdbResidueId
• resize() : ArrayBase , VectorBase , MatrixBase , RowVectorBase , MatrixHelper , ArrayHelper , ArrayBase , StableArray
• resizeKeep() : VectorBase , MatrixBase , RowVectorBase , MatrixHelper
• RestoFilterConvergenceCheck() : RestoFilterConvergenceCheck
• RestoIpoptNLP() : RestoIpoptNLP
• RestoIterateInitializer() : RestoIterateInitializer
• RestoIterationOutput() : RestoIterationOutput
• RestorationPhase() : RestorationPhase
• RestoRestorationPhase() : RestoRestorationPhase
• reverse() : ArrayBase , ArrayHelper
• rewt : WebData
• Rhenium() : Element::Rhenium
• Rho() : RestoIpoptNLP
• Rhodium() : Element::Rhodium
• rhs : UserData
• RibonucleosideResidue() : RibonucleosideResidue
• RibonucleotideResidue() : RibonucleotideResidue
• RiboseCore() : RiboseCore
• RiboseNu3Mobilizer() : RiboseNu3Mobilizer
• Rigid() : Body::Rigid
• RInv() : InverseTransform , Transform
• Rising : EventStatus
• RNA() : RNA
• RnaPhosphodiesterLinkage() : RnaPhosphodiesterLinkage
• Rod() : Constraint::Rod
• Roentgenium() : Element::Roentgenium
• root() : CPodesSystem
• rootInit() : CPodes
• RootReturn : CPodes
• Rotation() : Rotation
• Row() : Row
• row() : Rotation
• Row() : Row
• row() : InverseRotation
• Row() : Row
• row() : Mat , MatrixBase
• rowAndColScale() : MatrixBase
• rowAndColScaleInPlace() : MatrixBase
• RowColScaling() : SymScaledMatrix , SymScaledMatrixSpace
• rowScale() : VectorBase , MatrixBase , VectorBase , MatrixBase
• rowScaleInPlace() : MatrixBase , VectorBase
• RowScaling() : ScaledMatrix , ScaledMatrixSpace
• RowSpacing : Vec , NTraits< complex< R > > , CNT , negator , SymMat , NTraits< conjugate< R > > , Row , Mat
• rowSum() : MatrixHelper
• RowType : InverseRotation , Rotation
• RowVector : MatrixShapes
• RowVector_() : RowVector_
• RowVectorBase() : RowVectorBase
• RowVectorView_() : RowVectorView_
• Rubidium() : Element::Rubidium
• RubidiumIon() : RubidiumIon
• RungeKuttaFeldbergIntegrator() : RungeKuttaFeldbergIntegrator
• RungeKuttaMersonIntegrator() : RungeKuttaMersonIntegrator
• Ruthenium() : Element::Ruthenium
• Rutherfordium() : Element::Rutherfordium