Here is a list of all class members with links to the classes they belong to:

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• abs() : MatrixBase , RowVectorBase , negator , NTraits< complex< R > > , UnitVec , NTraits< conjugate< R > > , Mat , VectorBase , UnitRow , Row , SymMat , CNT , Vec
• AbstractValue() : AbstractValue
• Acceleration : Stage
• AccelerationIndex : Stage
• Acceptable() : FilterEntry , Filter
• acceptable_compl_inf_tol_ : OptimalityErrorConvergenceCheck
• acceptable_constr_viol_tol_ : OptimalityErrorConvergenceCheck
• acceptable_dual_inf_tol_ : OptimalityErrorConvergenceCheck
• acceptable_iter_ : OptimalityErrorConvergenceCheck
• acceptable_tol_ : OptimalityErrorConvergenceCheck
• AcceptTrialPoint() : IpoptData , TimingStatistics
• AcetylResidue() : AcetylResidue
• acoef : WebData , UserData
• Actinium() : Element::Actinium
• ActivateFallbackMechanism() : BacktrackingLineSearch , LineSearch
• Adams : CPodes
• AdaptiveMuUpdate() : AdaptiveMuUpdate
• Add : MatrixBase::EltResult , VectorBase::EltResult , RowVectorBase::EltResult , CNT::Result , negator::Result , NTraits< complex< R > >::Result , NTraits< conjugate< R > >::Result , Mat::EltResult , Mat::Result , Row::EltResult , Row::Result , SymMat::EltResult , SymMat::Result , Vec::EltResult , Vec::Result
• addAtom() : DuMMForceFieldSubsystem , PdbResidue
• addBody() : GeneralContactSubsystem
• addBodyDecoration() : MobilizedBody::Ellipsoid , MobilizedBody::Translation , MobilizedBody::Free , MobilizedBody::LineOrientation , MobilizedBody::FreeLine , MobilizedBody::Weld , MobilizedBody::Ground , MobilizedBody , MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Universal , MobilizedBody::Cylinder , MobilizedBody::BendStretch , MobilizedBody::Planar , MobilizedBody::Gimbal , MobilizedBody::Ball
• addBodyFixedDecoration() : DecorationSubsystem
• addBond() : DuMMForceFieldSubsystem
• AddBoundedIntegerOption() : RegisteredOptions
• AddBoundedNumberOption() : RegisteredOptions
• AddCachedResult() : CachedResults
• AddCachedResult1Dep() : CachedResults
• AddCachedResult2Dep() : CachedResults
• AddCachedResult3Dep() : CachedResults
• addCompound() : WritePdbReporter
• addCompoundSynonym() : Compound
• addConstrainedBody() : Constraint::Custom::Implementation
• addConstrainedMobilizer() : Constraint::Custom::Implementation
• addDecoration() : VTKVisualizer , Body , Body::Rigid , Body::Linear , Body::Ground , Body::Massless
• AddEntry() : Filter
• addEphemeralDecoration() : VTKVisualizer
• addEventHandler() : DefaultSystemSubsystem
• addEventReporter() : DefaultSystemSubsystem
• addFace() : PolygonalMesh
• AddFileJournal() : Journalist
• addFirstBondCenter() : Compound
• addForceSubsystem() : MultibodySystem
• addHalfSpace() : HuntCrossleyContact
• addIn() : MatrixHelper
• addInboardDecoration() : MobilizedBody , MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Universal , MobilizedBody::Cylinder , MobilizedBody::BendStretch , MobilizedBody::Planar , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Ellipsoid , MobilizedBody::Translation , MobilizedBody::Free , MobilizedBody::LineOrientation , MobilizedBody::FreeLine , MobilizedBody::Weld
• addInBodyTorque() : Constraint::Custom::Implementation , SimbodyMatterSubsystem
• addInMobilityForce() : SimbodyMatterSubsystem
• addInOneMobilityForce() : Constraint::Custom::Implementation
• addInStationForce() : SimbodyMatterSubsystem , Constraint::Custom::Implementation
• AddIntegerOption() : RegisteredOptions
• AddJournal() : Journalist
• addLeftHandedBondCenter() : Compound
• AddLowerBoundedIntegerOption() : RegisteredOptions
• AddLowerBoundedNumberOption() : RegisteredOptions
• AddMatrix() : DenseSymMatrix
• AddMatrixProduct() : DenseGenMatrix
• addMobilities() : SimbodyMatterSubtreeResults
• AddMSinvZ() : Matrix
• AddMSinvZImpl() : CompoundMatrix , ExpansionMatrix , IdentityMatrix , Matrix , ScaledMatrix
• AddNumberOption() : RegisteredOptions
• AddOneMultiVectorMatrix() : MultiVectorMatrix
• AddOneVector() : Vector
• AddOp : Mat::Result , Row::Result , SymMat::Result , Vec::Result
• addOutboardDecoration() : MobilizedBody , MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Universal , MobilizedBody::Cylinder , MobilizedBody::BendStretch , MobilizedBody::Planar , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Ellipsoid , MobilizedBody::Translation , MobilizedBody::Free , MobilizedBody::LineOrientation , MobilizedBody::FreeLine , MobilizedBody::Weld
• addPlanarBondCenter() : Compound
• AddRef() : ReferencedObject
• addRightHandedBondCenter() : Compound
• AddRightMultMatrix() : MultiVectorMatrix
• addRingClosingBond() : Compound
• addRubberBandLine() : VTKVisualizer , DecorationSubsystem
• AddScalar() : Vector
• AddScalarImpl() : CompoundVector , DenseVector , Vector
• addSecondBondCenter() : Compound
• addSphere() : HuntCrossleyContact
• AddStringOption() : RegisteredOptions
• AddStringOption1() : RegisteredOptions
• AddStringOption2() : RegisteredOptions
• AddStringOption3() : RegisteredOptions
• AddStringOption4() : RegisteredOptions
• AddStringOption5() : RegisteredOptions
• AddStringOption6() : RegisteredOptions
• AddStringOption7() : RegisteredOptions
• addSubsystem() : State
• addTerminalBody() : SimbodyMatterSubtree
• AddTwoVectors() : Vector
• AddTwoVectorsImpl() : CompoundVector , DenseVector , Vector
• AddUpperBoundedIntegerOption() : RegisteredOptions
• AddUpperBoundedNumberOption() : RegisteredOptions
• AddValidStringSetting() : RegisteredOption
• AddVectorQuotient() : Vector
• AddVectorQuotientImpl() : CompoundVector , DenseVector , Vector
• addVertex() : PolygonalMesh
• AdenineBase() : AdenineBase
• Adenylate() : RibonucleotideResidue::Adenylate
• AdjustedTrialSlacks() : IpoptCalculatedQuantities
• AdjustVariableBounds() : IpoptNLP , OrigIpoptNLP , RestoIpoptNLP
• adoptCompound() : CompoundSystem
• adoptConstraint() : SimbodyMatterSubsystem
• adoptForce() : GeneralForceSubsystem
• adoptMobilizedBody() : SimbodyMatterSubsystem
• adoptStudyGuts() : Study
• adoptSubsystem() : System::Guts
• adoptSubsystemGuts() : Subsystem
• advanceSubsystemToStage() : State
• advanceSystemToStage() : State
• advanceTimeBy() : MultibodyDynamicsStudy
• advanceToStage() : Subsystem::Guts
• Alanine() : AminoAcidResidue::Alanine
• AlcoholOHGroup() : AlcoholOHGroup
• AlgorithmBuilder() : AlgorithmBuilder
• AlgorithmStrategyObject() : AlgorithmStrategyObject
• AliphaticCarbon() : AliphaticCarbon
• AliphaticHydrogen() : AliphaticHydrogen
• allocateCacheEntry() : State , Subsystem::Guts
• allocateDiscreteVariable() : State , Subsystem::Guts
• allocateEvent() : State
• AllocateInternalStorage() : DenseVectorSpace
• allocateQ() : State , Subsystem::Guts
• allocateQErr() : State , Subsystem::Guts
• allocateU() : State , Subsystem::Guts
• allocateUDotErr() : State , Subsystem::Guts
• allocateUErr() : State , Subsystem::Guts
• allocateZ() : State , Subsystem::Guts
• Aluminium : Element
• Aluminum() : Element::Aluminum
• Amax() : Vector
• AmaxImpl() : DenseVector , CompoundVector , Vector
• Amber99ForceSubsystem() : Amber99ForceSubsystem
• Americium() : Element::Americium
• AminoAcidResidue() : AminoAcidResidue
• AnalyticBrick : AnalyticBrick
• AnalyticCircle() : AnalyticCircle
• AnalyticCurve : AnalyticCurve
• AnalyticCylinder : AnalyticCylinder
• AnalyticGeometry : AnalyticSurface , AnalyticVolume , AnalyticLine , AnalyticSphere , AnalyticCylinder , AnalyticBrick , AnalyticGeometry , AnalyticCircle , AnalyticCurve
• AnalyticLine : AnalyticLine
• AnalyticSphere : AnalyticSphere
• AnalyticSurface : AnalyticSurface
• AnalyticVolume : AnalyticVolume
• Antimony() : Element::Antimony
• AnUnrecoverableErrorOccurred : Integrator
• AnySignChange : EventStatus
• Ap : SpbcgMemRec
• APIArgcheckFailed() : APIArgcheckFailed
• app : IpoptProblemInfo
• append1() : Row , Vec
• Append_info_string() : IpoptData
• appendResidue() : Biopolymer , PdbChain , Biopolymer
• apply_grad_obj_scaling() : NLPScalingObject
• apply_grad_obj_scaling_NonConst() : NLPScalingObject
• apply_hessian_scaling() : NLPScalingObject , StandardScalingBase
• apply_jac_c_scaling() : NLPScalingObject , StandardScalingBase
• apply_jac_d_scaling() : NLPScalingObject , StandardScalingBase
• apply_obj_scaling() : NLPScalingObject , StandardScalingBase
• apply_vector_scaling_c() : NLPScalingObject , StandardScalingBase
• apply_vector_scaling_c_NonConst() : NLPScalingObject , StandardScalingBase
• apply_vector_scaling_d() : NLPScalingObject , StandardScalingBase
• apply_vector_scaling_d_LU() : NLPScalingObject
• apply_vector_scaling_d_LU_NonConst() : NLPScalingObject
• apply_vector_scaling_d_NonConst() : StandardScalingBase , NLPScalingObject
• apply_vector_scaling_x() : NLPScalingObject , StandardScalingBase
• apply_vector_scaling_x_LU() : NLPScalingObject
• apply_vector_scaling_x_LU_NonConst() : NLPScalingObject
• apply_vector_scaling_x_NonConst() : NLPScalingObject , StandardScalingBase
• applyAccelerationConstraintForces() : Constraint::Custom::Implementation
• applyBodyForce() : MobilizedBody
• applyBodyTorque() : MobilizedBody
• applyForce() : MobilizedBody::Slider
• applyForceToBodyPoint() : MobilizedBody
• applyOneMobilityForce() : MobilizedBody
• applyPinTorque() : MobilizedBody::Pin
• applyPositionConstraintForces() : Constraint::Custom::Implementation
• applyVelocityConstraintForces() : Constraint::Custom::Implementation
• area : ContactGeometry::TriangleMeshImpl::Face
• areAllDifferentAxes() : CoordinateAxis
• areAllRotationElementsSameToEpsilon() : Rotation
• areAllRotationElementsSameToMachinePrecision() : Rotation
• areAllSameAxes() : CoordinateAxis
• ArgDepth : Vec , Mat , CNT , Row , NTraits< complex< R > > , NTraits< conjugate< R > > , negator , SymMat
• Arginine() : AminoAcidResidue::Arginine
• Argon() : Biotype , Element::Argon , Argon
• AromaticSixMemberedCHGroup() : AromaticSixMemberedCHGroup
• Array() : Array
• ArrayBase() : ArrayBase
• ArrayHelper() : ArrayHelper
• ArrayView() : ArrayView
• Arsenic() : Element::Arsenic
• asMat33() : Rotation , InverseRotation
• asMat34() : Transform
• Asparagine() : AminoAcidResidue::Asparagine
• Aspartate() : AminoAcidResidue::Aspartate
• asRow3() : UnitRow
• Assert() : Assert
• assertIndexIsInRange() : CoordinateAxis
• assignBiotypes() : Biopolymer , BiopolymerResidue
• assumptions : MatrixStorage
• Assumptions : MatrixStorage
• Astatine() : Element::Astatine
• Asum() : Vector
• AsumImpl() : CompoundVector , DenseVector , Vector
• asVec3() : UnitVec
• asVec4() : Quaternion
• AtomicInteger() : AtomicInteger
• AtomName : Compound
• AtomPathName : Compound
• AtomTargetLocations : Compound
• attachAtomToBody() : DuMMForceFieldSubsystem
• attachClusterToBody() : DuMMForceFieldSubsystem
• AttachObserver() : Subject
• AugRestoSystemSolver() : AugRestoSystemSolver
• AugSystemSolver() : AugSystemSolver
• ax : UserData
• Axpy() : Vector
• AxpyImpl() : DenseVector , CompoundVector , Vector
• ay : UserData