Description: OpenMM Zephyr has been deprecated. We invite you instead to explore the OpenMM Script Builder web application, which provides a similar functionality.
With pull-down menus and error checking, you can easily generate a script to run your simulation on OpenMM. Access the OpenMM Script Builder at http://builder.openmm.org
. Read more about the OpenMM Script Builder and running scripts within OpenMM in Chapter 4 of the OpenMM Users' Guide at http://openmm.org
OpenMM Zephyr is a molecular simulation application for studying molecular dynamics of proteins, RNA, and other molecules. Zephyr guides the user through a work flow for setting up and running a specialized version of the molecular dynamics application gromacs. This version of gromacs uses the OpenMM API for GPU-accelerated molecular simulations.
Purpose/Synopsis: OpenMM Zephyr provides a visual application for running GPU-accelerated molecular simulations.
Audience: Scientists interested in creating GPU-accelerated molecular dynamics simulations using a graphical user interface.
Long Term Goals and Related Uses: Enable scientists to run molecular simulations using a discoverable graphical user interface.
Ontology Classification: Molecular_Dynamics, Molecular_Visualization
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Keywords: Gromacs, molecular dynamics interface
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