Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1149 projects
769394 downloads
80581 members
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Trending Projects

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Python tools for Markov state models

Enable painless construction and analysis of
Markov state models
New followers: 1
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Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To
provide free access to three-dimensional finite
element representations of the knee joint 2)
Open development of knee models for collaborative
testing and use
Downloads last week: 43
Total followers: 30
Total downloads: 21,772
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Plugin for non-linear strain rate behaviour of dense connective tissues

The force-length characteristics of dense
connective tissues (DCTs) vary non-linearly as a
function of strain rate. However, there is no
existing class of OpenSim® to incorporate strain
rate effect into the OpenSim® model. In this
work, a new plugin
New download files: 1
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Simulations of Crouch Gait

Simulations of individuals with cerebral palsy
who walk in a crouch gait . These simulations
were used in analyses of (1) contributions to mass
center accelerations, (2) impacts of muscle
weakness, (3) magnitudes of tibiofemoral contact
forces, and (4) evaluations of ankle foot orthoses
during crouch gait. Downloads provide all
supporting files for OpenSim simulations. Please
see accompanying publications for more
information.
Downloads last week: 22
Total downloads: 3,982
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Dynamic Arm Simulator

Provides a real-time, dynamic simulation of arm
movement.
Total followers: 21
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Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 21
Total downloads: 21,787
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MB Knee: Multibody Models of the Human Knee

This site provides data for building multibody
knee models from one in vivo subject and 3 cadaver
knees. The site also provides examples of knee
models that include compliant contacts, the
menisci, ligaments, and tissue wrapping.
Downloads last week: 23
Total downloads: 5,098
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Musculoskeletal Model of Head and Neck Suitable for Dynamic Simulations

This project provides an improved model of the
head and neck, that is suitable for dynamic
simulations. This model is the first of its kind
to offer realistic moment generating capacity in
all directions.
New followers: 1
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MSMBuilder

Provide extensible software for building Markov
State Models.
New followers: 1
Total downloads: 5,486
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Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with
OpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 30
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OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 1,021
Forum posts last week: 23
Total followers: 51
Total downloads: 160,312
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Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how
muscles contribute to propulsion (i.e., the
fore-aft acceleration) and support (i.e., the
vertical acceleration) of the body mass center
during running.
Downloads last week: 41
Total followers: 27
Total downloads: 12,820
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific
cardiovascular modeling and simulation.
Downloads last week: 98
Forum posts last week: 11
Total followers: 56
Total downloads: 13,285
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Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB

This project overcomes neuromusculoskeletal
systems limitations of MATLAB®/Simulink® and
robust design & control limitations of OpenSim
through an interface between these two software
packages that combines relevant strengths of each
individual package.
Total followers: 33
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2007BioE15 Bruns

Submit materials for class
Total followers: 42

By Category

Biological applications
Biocomputational focus

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Jobs

Postdoc position in numerical models of human locomotion

The Biorobotics laboratory, EPFL
April 15, 2019
The Biorobotics laboratory at EPFL (Lausanne, Switzerland) has one open postdoc position in numerical simulations of human locomotion. The goal of the project is to develop neuromechanical models of human locomotion, together with Stéphane Armand (gait analysis, University of Geneva) and Alexandros Kalousis (machine learning, University of applied sciences, Western Switzerland), in the framework of a collaborative Sinergia project funded by the Swiss National Science Foundation.

Positions open

Case Western Reserve University
April 8, 2019
The Department of Biomedical Engineering at Case Western Reserve University in Cleveland Ohio is actively searching for strong doctoral or post-doctoral candidates in the areas of neurorehabilitation, biomechanical modeling and control system development to improve or restore motor function to individuals with Spinal Cord Injuries (SCI).

See all job openings...

News

Experimental determination of 3D knee compliance

The Virtual Human Knee: ligament & articular surface mechanics Feb 6, 2019
Image not availableThe pilot experiment drawing a link between clinically-viable uniaxial laxity test and 3D knee compliance have just gone out.

SimVascular New Release

SimVascular: Cardiovascular Modeling and Simulation Jan 24, 2019
Image not availablePlease visit our downloads page to access the new January 2019 SimVascular release for Mac, Windows and Linux!

Python scripts for Full Body Model are available

OpenSim Full Body Model with Python Jan 9, 2019
Image not availableNew project OpenSim Full Body Model with Python is available at SimTK: https://simtk.org/projects/fullbody-py It extends "Full Body Model for use in Dynamic Simulations of Human Gait" (https://simtk.org/projects/full_body) with Python scripts which are equivalent to the Matlab scrips provided with the model.

Simulations of Muscle Spasticity

Simulating Muscle Spasticity in Children with Cerebral Palsy Jan 3, 2019
Image not availableCode and data to simulate muscle spasticity during passive stretches and gait in children with cerebral palsy: https://simtk.org/projects/simcpspasticity/

First OpenArm 3D muscle deformation data set released!

OpenArm: Volumetric Models of Force- and Kinematic-Induced Muscle Deformation Nov 29, 2018
Image not availableThe first generation of the OpenArm data set has now been ported from our lab website to the SimTK community!

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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