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Trending Projects

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Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To provide free access to three-dimensional finite element representations of the knee joint 2) Open development of knee models for collaborative testing and use
Downloads last week: 52
Total followers: 21
Total downloads: 10,008
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Platform for Dynamic Simulation and Control of Movement based on OpenSim&MATLAB

This project overcomes neuromusculoskeletal systems limitations of MATLAB®/Simulink® and robust design & control limitations of OpenSim through an interface between these two software packages that combines relevant strengths of each individual package.
New followers: 1
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Drop Landing Model

Provide an example model for generating predictive musculoskeletal simulations to mitigate injury and inform device design.
Forum posts last week: 1
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Data-tracking optimization using collocation

This project contains a package that can be used to perform data-tracking optimization using collocation method. The codes and models are available. The tracking results for one subject during walking and running are also provided.
Downloads last week: 20
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Developing Retinal Vascular ABM with Pericytes

Objective: Define a role for perivascular cells during developmental retinal angiogenesis in the context of endothelial cell Notch1-DLL4 signaling at the multicellular network level. Methods: The retinal vasculature is highly sensitive to growth factor m
Forum posts last week: 1
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SimVascular: Examples and Clinical Cases

Download examples and clinical case files for cardiovascular modeling and simulation compatible with SimVascular
Downloads last week: 42
Total downloads: 337
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MSMBuilder

Provide extensible software for building Markov State Models.
Downloads last week: 24
Total downloads: 5,619
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OpenMM

OpenMM includes everything one needs to run modern molecular simulations. It is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent GPUs.
Downloads last week: 504
Forum posts last week: 25
Total followers: 34
Total downloads: 95,869
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Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running.
Downloads last week: 21
Total downloads: 9,100
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Musculoskeletal Model of the Lumbar Spine

Make publicly available a musculoskeletal model of the lumbar spine to be used for modeling lumbar spine kinematics as well as for further improvement by the biomechanics community.
Downloads last week: 36
Total downloads: 7,454
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific cardiovascular modeling and simulation.
Downloads last week: 105
Forum posts last week: 2
New download files: 6
Total followers: 35
Total downloads: 6,902
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Simulations of Crouch Gait

Simulations of individuals with cerebral palsy who walk in a crouch gait as described in Steele et al. 2010 (Journal of Biomechanics) and Steele et al. 2013 (Gait & Posture); available for download and use by others.
Downloads last week: 21
Total downloads: 1,925
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Vector Space Construction for the Microbiome

Project with the FDA as part of the UCSF-Stanford CERSI to predict drug metabolism by bacteria in the human gut. Prototyped on MetaCyc data using the mol2vec pipeline from Stefano Rensi. Work as part of student's masters thesis in Russ Altman's lab at Sta
Forum posts last week: 1
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MB Knee: Multibody Models of the Human Knee

Provide the components for building multibody knee models based on three cadaver subjects. The site also provides complete example models including contacts, ligaments, and menisci.
Downloads last week: 37
Total downloads: 3,890
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Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with OpenSim, for the estimation of the human lower extremity muscle and joint dynamics.
Downloads last week: 21
Total followers: 23
Total downloads: 986

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Jobs

PostDoc: Musculoskeletal Modeling for Lower Limb Orthotic and Prosthetic Technologies

Clinics for Trauma Surgery, Orthopedic Surgery and Plastic Surgery Feb 17, 2017
The post holder will work at the Clinics for Trauma Surgery, Orthopedic Surgery and Plastic Surgery at the University Medical Center Göttingen (http://cuop-umg.de) and will be hired as part of the newly established BMBF INOPRO project funded by the German Federal Ministry of Education and Research.

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News

New file added: SimTK_optcntrlmuscle_V04182017_v1.1.zip

Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem Apr 19, 2017
Image not availableA new file, SimTK_optcntrlmuscle_V04182017_v1.1.zip, has been added to release Version 1.1 (04/18/2017).

Webinar on tips and tricks for data collection, scaling and inverse kinematics in OpenSim

OpenSim Apr 13, 2017
Image not availableWe invite you to join us for a webinar featuring Jenny Yong and James Dunne from Stanford University to learn about OpenSim best practices for collecting and importing motion capture data.

New SimVascular user interface

SimVascular: Cardiovascular Modeling and Simulation Apr 13, 2017
Image not availableWe have just released a new completely overhauled SimVascular user interface.

SimVascular workshop at June SB3C meeting

SimVascular: Cardiovascular Modeling and Simulation Mar 22, 2017
Image not availableWe will be hosting a workshop for SimVascular user training on Wednesday June 21 as part of the SB3C meeting in Tuscon, Arizona.

OpenSim lower limb model in Super Bowl Nike commercial

OpenSim Feb 7, 2017
Image not availableThe Nike commercial during the Super Bowl includes footage from OpenSim and our lower limb model.

SimTK is maintained through Grant R01 GM107340 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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