Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

980 projects
521709 downloads
64210 members
Join Us

Trending Projects

Image not available

Thoracolumbar spine and rib cage model in OpenSim

The aim of this project is to provide detailed and well-validated musculoskeletal models of the thoracolumbar spine and rib cage, particularly for investigators with an interest studying musculoskeletal loading in the trunk.
New followers: 1
Image not available

3D Deep CNN for Amino Acid Environment Similarity Analysis


New download files: 1
Image not available

Modeling, Evaluation, and Control Optimization of Exosuit with OpenSim

- Gives an example of how to use OpenSim as an analysis tool of wearable device - Provide example simulation models that is easy to use and modify
Forum posts last week: 1
Image not available

Full Body Model for use in Dynamic Simulations of Human Gait

Full body musculoskeletal model with muscle-actuated lower extremity and torque-actuated torso/upper extremity for use in dynamic simulations of human movement.
Downloads last week: 17
Total downloads: 1,142
Image not available

Predicting allosteric communication in myosin via a conserved residue pathway

  1. Better understand the allosteric communication pathway used by Myosin to convert ATP hydrolysis energy into movement along actin.
  2. Provide researchers with an application and code for finding protein allosteric pathways.

Downloads last week: 31
Total downloads: 1,272
Image not available

Hopping performance

Metabolic cost of hopping
Forum posts last week: 1
Image not available

Identification of 139 Human Transcriptomic Modules using ICA

We identified 139 transcriptomic profiles (aka Functional Components; FCs) in a data-driven fashion from a large set of microarray data from GEO. We also constructed a human tissue compendium to accompany the work. We have written up an R package that wou
New download files: 1
Image not available

SimVascular: Examples and Clinical Cases

Download examples and clinical case files for cardiovascular modeling and simulation compatible with SimVascular
Downloads last week: 15
Total downloads: 522
Image not available

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the first "whole-cell" model of the entire life cycle of a living organism, Mycoplasma genitalium.
Downloads last week: 39
Total downloads: 15,639
Image not available

OpenMM

OpenMM includes everything one needs to run modern molecular simulations. It is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent GPUs.
Downloads last week: 348
Forum posts last week: 7
Total followers: 39
Total downloads: 99,896
Image not available

Stroke gait

To generate simulations of post-stroke gait, compare the performance of optimization algorithms, and identify differences between 2d and 3d results.
Forum posts last week: 1
Total downloads: 1,631
Image not available

Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with OpenSim, for the estimation of the human lower extremity muscle and joint dynamics.
Total followers: 23
Total downloads: 1,066
Image not available

2007BioE15 Bruns

Submit materials for class
Total followers: 20
New followers: 1
Image not available

RRA Optimization MATLAB GUI

A MATLAB based graphical user interface (GUI) has been developed that uses numerical optimization to determine the optimal task weights for use with the Residual Reduction Algorithm (RRA) in OpenSim.
New followers: 1
Image not available

Simulation of ARED Squat Exercise on the International Space Station

Provide the OpenSim model used in the journal article along with sample inputs so that others can simulate ARED squat exercise on the International Space Station.
New followers: 1

By Category

Biological applications
Biocomputational focus

Communities

Jobs

PostDoc: Musculoskeletal Modeling for Lower Limb Orthotic and Prosthetic Technologies

Clinics for Trauma Surgery, Orthopedic Surgery and Plastic Surgery Feb 17, 2017
The post holder will work at the Clinics for Trauma Surgery, Orthopedic Surgery and Plastic Surgery at the University Medical Center Göttingen (http://cuop-umg.de) and will be hired as part of the newly established BMBF INOPRO project funded by the German Federal Ministry of Education and Research.

See all job openings...

News

Announcing new SimCardio Project!

SimVascular: Cardiovascular Modeling and Simulation Jun 30, 2017
Image not availableWe are pleased to announce that we have received another 4 years of NSF support to expand SimVascular and develop the SimCardio integrative cardiac modeling package!

New file added: SimTK_optcntrlmuscle_V04182017_v1.1.zip

Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem Apr 19, 2017
Image not availableA new file, SimTK_optcntrlmuscle_V04182017_v1.1.zip, has been added to release Version 1.1 (04/18/2017).

Webinar on tips and tricks for data collection, scaling and inverse kinematics in OpenSim

OpenSim Apr 13, 2017
Image not availableWe invite you to join us for a webinar featuring Jenny Yong and James Dunne from Stanford University to learn about OpenSim best practices for collecting and importing motion capture data.

New SimVascular user interface

SimVascular: Cardiovascular Modeling and Simulation Apr 13, 2017
Image not availableWe have just released a new completely overhauled SimVascular user interface.

SimVascular workshop at June SB3C meeting

SimVascular: Cardiovascular Modeling and Simulation Mar 22, 2017
Image not availableWe will be hosting a workshop for SimVascular user training on Wednesday June 21 as part of the SB3C meeting in Tuscon, Arizona.

SimTK is maintained through Grant R01 GM107340 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

Our Pledge and Your Responsibility

  About   Join
Version 2.0.17. Website design by Viewfarm. Icons created by SimTK team using art by GraphBerry from www.flaticon.com under a CC BY 3.0 license. Forked from FusionForge 5.3.2.
Feedback