Trending Projects
Matlab-Opensim Interfaces
Provides tools for using different aspects ofOpensim within the Matlab environment, including
command line pipelines as well as accessing the
Opensim API directly. The main functionality
has now been included as part of Opensim 3.0 with
improved functionality (and will become more
obsolete with Opensim 4.0). Please see the
developer wiki for more information. Therefore
this is being kept only as an archive, and users
should see the documentation on interfacing Matlab
with Opensim on the Opensim website
(http://simtk-confluence.stanford.edu:8080/display
/OpenSim/Scripting+with+Matlab). As such the
forums etc will not be monitored.
Total followers: 24
Total downloads: 8,311
OpenMM Zephyr
OpenMM Zephyr provides a visual application forrunning GPU-accelerated molecular simulations.
Downloads last week: 592
Total downloads: 52,809
OpenSim Moco
OpenSim Moco solves optimal control problems withmusculoskeletal models defined in OpenSim, using
direct collocation.
Forum posts last week: 8
SimVascular: Examples and Clinical Cases
Download examples and clinical case files forcardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 67
Total downloads: 10,486
Multi-segment Foot and ankle model validated using biplanar videoradiography
A multi-segment foot and ankle model consisting ofthe tibia, talus, calcaneus, midfoot, forefoot and
toes, with a total of 7 degrees of freedom. Motion
between segments were constrained such that all
joints except for the ankle were modelled as a
revolut
Downloads last week: 117
OpenArm: Volumetric & Time Series Models of Muscle Deformation
The OpenArm data sets are designed to enable studyof force- and kinematic-induced muscle deformation
for applications in biomechanics research,
computer graphics, and assistive device
development. **NEW:** The OpenArm Multisensor
2.0 data set contains new time series of
ultrasound-measured brachioradialis deformation,
surface electromyography (sEMG)-measured
activation, force, and goal trajectory data, for
various force-, deformation-, and activation-based
trajectory tracking tasks, under refined
conditions from those of the 1.0 data set. Also
included are all analysis, real-time muscle
deformation tracking, and display code. The
OpenArm Multisensor 1.0 data set contains time
series cross-sectional ultrasound scans of the
brachioradialis muscle under variable elbow
loading, alongside corresponding surface
electromyography (sEMG), acoustic myography (AMG),
and force data. The OpenArm 1.0 and 2.0 data
sets encompass factorial sets of volumetric scans
of the arm, generated using ultrasound and motion
capture, that allow for analysis of both force-
and configuration-associated muscle deformation.
Downloads last week: 76
Total downloads: 8,529
Reproducibility in simulationÂ-based prediction of natural knee mechanics
This project aims for understanding the influenceof modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 80
Total downloads: 17,077
OpenMM
OpenMM includes everything one needs to run modernmolecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 740
Total followers: 66
Total downloads: 631,141
Data-driven prediction of gait with ankle exoskeletons
We used these datasets to predict changes inkinematics and muscle activity in response to
varying ankle exoskeleton stiffness.
Downloads last week: 42
Snorkel
Snorkel is an open-source system that generatestraining data for information extraction systems,
also known as predictive systems.
Downloads last week: 153
Total downloads: 31,404
Whole-Cell Computational Model of Mycoplasma genitalium
This project provides all code and data for thefirst "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 239
Total downloads: 131,213
Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)
Provides an easy to use toolbox, compatible withOpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 41
Dynamic Arm Simulator
Provides a real-time, dynamic simulation of armmovement.
Forum posts last week: 1
Total followers: 31
OpenSim
Provide easy-to-use, extensible software formodeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,427
Forum posts last week: 29
Total followers: 298
Total downloads: 659,494
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Biological applications
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Jobs
NIH-funded Post-doctoral Position
Rice Computational Neuromechanics Lab
Sep 13, 2022
Sep 13, 2022
The Rice Computational Neuromechanics Lab directed by B.J. Fregly is seeking to hire a creative and highly-motivated post-doctoral research associate, with an appointment beginning as soon as possible. We are seeking candidates who have demonstrated ability to lead and/or work collaboratively in teams composed of individuals of diverse backgrounds, skills, and perspectives.
Postdoctoral Scholar - Human Performance Alliance Innovation Hub
University of Oregon
Aug 19, 2022
Aug 19, 2022
A postdoctoral research position is available at the Bowerman Sports Science Center within the new Hayward Field athletics facility at the University of Oregon, Eugene, OR. This position will join a vibrant team of research staff, graduate students, postdoctoral researchers and faculty in applied physiology and biomechanics, all working in association with the Wu Tsai Human Performance Alliance Innovation Hub at the University of Oregon. Additionally, the position will involve frequent collaboration with Bioengineering faculty and research staff in the Phil and Penny Knight Campus for Accelerating Scientific Impact.
News
SimVascular Workshop at SB3C 2022 June 23rd
SimVascular: Cardiovascular Modeling and Simulation
May 26, 2022