Matlab-Opensim Interfaces

Provides tools for using different aspects of
Opensim within the Matlab environment, including
command line pipelines as well as accessing the
Opensim API directly. The main functionality
has now been included as part of Opensim 3.0 with
improved functionality (and will become more
obsolete with Opensim 4.0). Please see the
developer wiki for more information. Therefore
this is being kept only as an archive, and users
should see the documentation on interfacing Matlab
with Opensim on the Opensim website
(http://simtk-confluence.stanford.edu:8080/display
/OpenSim/Scripting+with+Matlab). As such the
forums etc will not be monitored.
Total followers: 24
Total downloads: 8,311

OpenMM Zephyr

OpenMM Zephyr provides a visual application for
running GPU-accelerated molecular simulations.
Downloads last week: 592
Total downloads: 52,809

OpenSim Moco

OpenSim Moco solves optimal control problems with
musculoskeletal models defined in OpenSim, using
direct collocation.
Forum posts last week: 8

SimVascular: Examples and Clinical Cases

Download examples and clinical case files for
cardiovascular modeling and simulation compatible
with SimVascular
Downloads last week: 67
Total downloads: 10,486

Multi-segment Foot and ankle model validated using biplanar videoradiography

A multi-segment foot and ankle model consisting of
the tibia, talus, calcaneus, midfoot, forefoot and
toes, with a total of 7 degrees of freedom. Motion
between segments were constrained such that all
joints except for the ankle were modelled as a
revolut
Downloads last week: 117

OpenArm: Volumetric & Time Series Models of Muscle Deformation

The OpenArm data sets are designed to enable study
of force- and kinematic-induced muscle deformation
for applications in biomechanics research,
computer graphics, and assistive device
development. **NEW:** The OpenArm Multisensor
2.0 data set contains new time series of
ultrasound-measured brachioradialis deformation,
surface electromyography (sEMG)-measured
activation, force, and goal trajectory data, for
various force-, deformation-, and activation-based
trajectory tracking tasks, under refined
conditions from those of the 1.0 data set. Also
included are all analysis, real-time muscle
deformation tracking, and display code. The
OpenArm Multisensor 1.0 data set contains time
series cross-sectional ultrasound scans of the
brachioradialis muscle under variable elbow
loading, alongside corresponding surface
electromyography (sEMG), acoustic myography (AMG),
and force data. The OpenArm 1.0 and 2.0 data
sets encompass factorial sets of volumetric scans
of the arm, generated using ultrasound and motion
capture, that allow for analysis of both force-
and configuration-associated muscle deformation.
Downloads last week: 76
Total downloads: 8,529

Reproducibility in simulation­-based prediction of natural knee mechanics

This project aims for understanding the influence
of modelers’ approaches and decisions
(essentially their art) throughout the lifecycle
of modeling and simulation. It will demonstrate
the uncertainty of delivering consistent
simulation predictions when the founding data to
feed into models remain the same. The project site
also aims to be a hub to provide an overview of
resources for modeling & simulation of the knee
joint. Funding is provided by the National
Institute of Biomedical Imaging and
Bioengineering, National Institutes of Health
(Grant No. R01EB024573).
Downloads last week: 80
Total downloads: 17,077

OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 740
Total followers: 66
Total downloads: 631,141

Data-driven prediction of gait with ankle exoskeletons

We used these datasets to predict changes in
kinematics and muscle activity in response to
varying ankle exoskeleton stiffness.
Downloads last week: 42

Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 153
Total downloads: 31,404

2007BioE15 Bruns

Submit materials for class
Total followers: 73

Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 239
Total downloads: 131,213

Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with
OpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 41

Dynamic Arm Simulator

Provides a real-time, dynamic simulation of arm
movement.
Forum posts last week: 1
Total followers: 31

OpenSim

Provide easy-to-use, extensible software for
modeling, simulating, controlling, and analyzing
the neuromusculoskeletal system.
Downloads last week: 1,427
Forum posts last week: 29
Total followers: 298
Total downloads: 659,494