Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

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411712 downloads
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Trending Projects

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STAMS: STRING-Assisted Module Search for Genome Wide Association Studies

Provides code and example data for analyzing GWAS data with a network-based approach. Finds modules of genes that are enriched for GWAS signal and have high confidence biological coherence.
Forum posts last week: 1
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Efficient Methods for Multi-Domain Biomechanical Simulations

(1) To develop generic algorithms to generate computationally efficient surrogate tissue mechanics models by adaptive sampling of finite element models. (2) To simulate human gait using a musculoskeletal dynamics model coupled to a foot model.
New followers: 1
Total downloads: 913
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OpenSim Soccer Ball Kicking Example

Provides an installer for producing forward dynamics simulations of a soccer ball kick.
Downloads last week: 20
New followers: 1
Total downloads: 2,393
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2007BioE15 Bruns

Submit materials for class
New followers: 1
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Synergy Optimization: A plug-in to couple muscle activity in OpenSim

Provides an OpenSim plug-in for coupling muscle activity with static optimization for synergy-based control or other applications.
New followers: 1
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OpenMM

OpenMM includes everything one needs to run modern molecular simulations. It is extremely flexible with its custom functions, is open-source, and has high performance, especially on recent GPUs.
Downloads last week: 619
Forum posts last week: 12
Total followers: 24
Total downloads: 73,353
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OpenSim Motion and Simulation Data

The purpose of this umbrella project is to provide a central repository of user-contributed OpenSim motion and simulation data.
New followers: 1
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Tim's OpenSim Utilities

A set of OpenSim plugins/scripts written by Tim Dorn to extend the functionality of OpenSim
Downloads last week: 20
Total downloads: 1,998
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Surrogate Contact Modeling Toolbox

Provides the tools to create, test, and use surrogate contact models.
New followers: 1
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Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with OpenSim, for the estimation of the human lower extremity muscle and joint dynamics.
Total followers: 20
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Simbody: Multibody Physics API

Simbody is useful for internal coordinate and coarse grained molecule modeling, large scale mechanical models like skeletons, and anything else that can be modeled as bodies interconnected by joints, acted upon by forces, and restricted by constraints.
Downloads last week: 18
Total downloads: 2,949
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SimVascular: Cardiovascular Modeling and Simulation

Provides a platform for patient-specific cardiovascular modeling and simulation.
Downloads last week: 51
Forum posts last week: 3
Total followers: 24
Total downloads: 5,177
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OpenMM Zephyr

OpenMM Zephyr provides a visual application for running GPU-accelerated molecular simulations.
Downloads last week: 25
Total downloads: 7,613
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Muscle-actuated Simulation of Human Running

The purpose of this study was to determine how muscles contribute to propulsion (i.e., the fore-aft acceleration) and support (i.e., the vertical acceleration) of the body mass center during running.
Downloads last week: 39
Total downloads: 7,668
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Open Knee(s): Virtual Biomechanical Representations of the Knee Joint

Overall purposes of the project are: 1) To provide free access to three-dimensional finite element representations of the knee joint 2) Open development of knee models for collaborative testing and use
Downloads last week: 80
Total downloads: 6,061

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Jobs

Post­Doctoral Fellowship: Altered Control in Cerebral Palsy

UW Ability & Innovation Lab August 11, 2016
The University of Washington’s Ability & Innovation Lab has an opening for a postdoctoral fellow.

Post­Doctoral Fellowship: Tracking & Training Muscle Activity After Stroke

UW Ability & Innovation Lab August 11, 2016
The University of Washington’s Ability & Innovation Lab has an opening for a postdoctoral fellow focused on creating mobile technology to track and train muscle activity after stroke.

See all job openings...

News

Webinar on Best Practices and Lessons Learned in Getting BioGears Adopted

Credible Practice of Modeling & Simulation in Healthcare Sep 1, 2016
Image not availableThe Committee for Credible Practice of Modeling & Simulation in Healthcare (CPMS) invites you to join us for an informative webinar featuring Jeff Webb from Applied Research Associates on translating physiology modeling and simulation research into the clinic.

Course on Open-Source Tools for Computational Biomechanics

OpenSim Aug 30, 2016
Image not availableThe OpenSim team is participating in an IEEE Boston workshop on Thursday, September 15, 2016 that introduces participants to three open-source tools: GIBBON for image segmentation; FEBio for finite element analysis; and OpenSim for musculoskeletal modeling and simulation.

New file added: SimTK_optcntrlmuscle_V08242016.zip

Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem Aug 25, 2016
Image not availableA new file, SimTK_optcntrlmuscle_V08242016.zip, has been added to release 08/24/2016 of MuscleRedundancySolver.

OpenSim Workshop at Summer School on Neurorehabilitation

OpenSim May 5, 2016
Image not availableMassimo Sartori and Monica Reggiani are leading a workshop, "Musculoskeletal Modeling and Simulation of Human Movement in OpenSim" at the Summer School in Neurorehabilitation (http://www.ssnr2016.org/) in Baiona, Spain from June 6-10, 2016.

OpenSim Workshop at the International Shoulder Group meeting

OpenSim May 4, 2016
Image not availableThe 11th Conference of the International Shoulder Group (ISG) will be held from 14th-16th July 2016 in Winterthur, Switzerland and will include a half-day OpenSim workshop.

SimTK is maintained through Grant R01 GM107340 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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