Enabling groundbreaking biomedical research via open access to high-quality simulation tools, accurate models, and the people behind them.

1099 projects
693260 downloads
75805 members
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Trending Projects

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Whole-Cell Computational Model of Mycoplasma genitalium

This project provides all code and data for the
first "whole-cell" model of the entire life cycle
of a living organism, Mycoplasma
genitalium.
Downloads last week: 92
Total downloads: 19,699
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Drop Foot and AFOs

Drop foot is a condition that can affect
individuals who have suffered a stroke, cerebral
palsy, or injury to the cerebrum. It occurs when
the muscles in the ankle and/or lower leg are
weak, causing the foot to drop and drag during
gait. The knee on the a
New followers: 1
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Lee-Son's Toolbox: a Toolbox that Converts VICON Mocap Data into OpenSim Inputs

　 Provide an easy and fast way to convert VICON
motion capture data into OpenSim inputs
Downloads last week: 26
Total downloads: 4,222
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Convert .c3d and .csv files to OpenSim files without any program but MatLab

Convert experimental biomechanical data into
OpenSim input files without the need of any other
software but MatLab©. Persons with little or no
knowledge of computation programing can use this
routine to
Downloads last week: 23
Total downloads: 1,983
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Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem

This project provides Matlab code for solving the
muscle redundancy problem using direct
collocation.
New download files: 1
New followers: 1
New members: 1
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Grand Challenge Competition to Predict In Vivo Knee Loads

Provide a comprehensive data set with associated
models that will enable researchers to validate
musculoskeletal model estimates of muscle and
joint contact forces in the knee.
Downloads last week: 34
New followers: 1
Total downloads: 12,211
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OpenMM

OpenMM includes everything one needs to run modern
molecular simulations. It is extremely flexible
with its custom functions, is open-source, and has
high performance, especially on recent GPUs.
Downloads last week: 385
Forum posts last week: 5
Total followers: 49
Total downloads: 134,153
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Calibrated EMG-Informed Neuromusculoskeletal Modelling Toolbox (CEINMS)

Provides an easy to use toolbox, compatible with
OpenSim, for the estimation of the human lower
extremity muscle and joint dynamics.
Total followers: 28
Total downloads: 1,790
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Snorkel

Snorkel is an open-source system that generates
training data for information extraction systems,
also known as predictive systems.
Downloads last week: 34
Total downloads: 3,684
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Spasticity model in OpenSim

Provides a model of spasticity that can be added
to any muscle in an .osim model. The spastic
muscle will show spastic behavior when running for
example a Forward or CMC tool.
New followers: 1
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Molecular Dynamics Workshop Series, June 24-26, 2009

Provide workshop materials to introduce
programmers and scientists to OpenMM, MSMBuilder,
and OpenMM Zephyr.
Downloads last week: 32
Total downloads: 2,442
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2018 Fall OpenSim Virtual Workshop

The 2018 Fall Virtual Workshop will bring together
a group of international scholars and OpenSim
experts to help each other advance their research
using modeling and simulation. This forum is a
place to accelerate OpenSim based projects while
also buildin
New followers: 1
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Extendable OpenSim-Matlab Infrastructure Using Class Oriented C++ Mex Interface

This project aims to provide an easy to used
extendable C++ interface between OpenSim and
Matlab.
Forum posts last week: 2
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ForceBalance : Systematic Force Field Optimization

ForceBalance is a powerful and highly versatile
software package for force field optimization.
New download files: 1
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Transtibial (below-knee) amputee OpenSim model and Biarticular Prosthesis

This project has two main aims: 1) To develop
and validate a transtibial amputee model with
representative mass, inertial, and muscular
properties 2) To use this model to analyze
collected gait data from transtibial amputees
walking on a Biarticular Prosthesis prototype
Downloads last week: 58

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Biological applications
Biocomputational focus

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Jobs

Postdoctoral Fellow

Washington State University
November 12, 2018
A one-year postdoctoral position is available immediately in the area of neck musculoskeletal modeling. The goal of the work is to examine neck muscle forces and cervical disc loads in static and dynamic conditions.

Researcher Position

University of Tübingen
October 29, 2018
A funded researcher position for 6 to 12 Months in the project "Multi-level modelling of neuro-muscular disorders at the wrist" is offered at the University of Tübingen.

Faculty Position

Columbia University
October 26, 2018
The Department of Mechanical Engineering welcomes applications for a faculty position at open rank. We are searching broadly in ALL AREAS of mechanical engineering, and encourage candidates with an interest in the school-wide initiatives that relate to engineering and medicine, autonomous systems, and sustainability.

Assistant, Associate Professor

Stanford University
October 26, 2018
The Department of Mechanical Engineering at Stanford University invites applications for a tenure-track faculty appointment at the junior level (Assistant or untenured Associate Professor).

Neuroengineering Faculty Position

The University of Southern California
October 26, 2018
The University of Southern California, one of the nation’s top research universities, invites applications for tenure-track positions in the Department of Biomedical Engineering in the Viterbi School of Engineering.

See all job openings...

News

Muscle Redundancy Solver: new release

Direct Collocation Optimal Control for Solving the Muscle Redundancy Problem Nov 9, 2018
Image not availableA new open-source version of the muscle redundancy solver is out: https://simtk.org/projects/optcntrlmuscle

Webinar on Jumping Into OpenSim 4.0

OpenSim Nov 8, 2018
Image not availableWe invite you to join us for a webinar featuring Ayman Habib, Jennifer Hicks, Tom Uchida, and Ajay Seth from Stanford University.

Webinar on SimCP - A Simulation Platform to Predict Gait Performance Following Orthopedic Interventions in Children with Cerebral Palsy

OpenSim Sep 6, 2018
Image not availableWe invite you to join us for a webinar featuring Ilse Jonkers and Friedl De Groote from the Human Movement Biomechanics Research Group at KU Leuven in Belgium.

Webinar on robust control strategies for musculoskeletal models using deep reinforcement learning

OpenSim Jul 24, 2018
Image not availableWe invite you to join us for a webinar featuring Łukasz Kidziński from Stanford University giving an introduction to reinforcement learning and its application to developing control strategies.

SimVascular Workshop at WCB Dublin

SimVascular: Cardiovascular Modeling and Simulation May 7, 2018
Image not availableIf you are attending the WCB Dublin 2018, please come to our SimVascular workshop Sunday July 8.

SimTK is maintained through Grant R01GM124443 01A1 from the National Institutes of Health (NIH). It was initially developed as part of the Simbios project funded by the NIH as part of the NIH Roadmap for Medical Research, Grant U54 GM072970.

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