- s -

• s() : IteratesVector
• s_NonConst() : IteratesVector
• Samarium() : Element::Samarium
• Scal() : Vector
• Scalar() : DenseVector
• scalarAdd() : SymMat , Vec , Mat , Row
• scalarAddInPlace() : MatrixBase
• scalarAssign() : MatrixBase
• scalarColSum() : MatrixHelper
• scalarDivide() : Vec , Mat , Row , SymMat
• scalarDivideEq() : Mat , Row , SymMat , Vec
• scalarDivideEqFromLeft() : Mat , SymMat , Vec
• scalarDivideFromLeft() : Mat , Row , SymMat , Vec
• scalarDivideFromLeftInPlace() : MatrixBase
• scalarDivideInPlace() : MatrixBase
• scalarEq() : SymMat , Vec , Mat , Row
• ScalarFunction() : Differentiator::ScalarFunction
• scalarInverseDivideEq() : Row
• scalarInverseMinusEq() : Row
• scalarMinusEq() : Mat , Row , SymMat , Vec
• scalarMinusEqFromLeft() : Mat , SymMat , Vec
• scalarMultiply() : Mat , Row , SymMat , Vec
• scalarMultiplyFromLeft() : Mat , Row , SymMat , Vec
• scalarMultiplyFromLeftInPlace() : MatrixBase
• scalarMultiplyInPlace() : MatrixBase
• scalarNormSqr() : MatrixBase , CNT , negator , NTraits< complex< R > > , NTraits< conjugate< R > > , Mat , Row , SymMat , Vec
• scalarPlusEq() : Row , SymMat , Vec , Mat
• scalarRowSum() : MatrixHelper
• scalarSubtract() : Mat , Row , SymMat , Vec
• scalarSubtractFromLeft() : Mat , Row , SymMat , Vec
• scalarSubtractFromLeftInPlace() : MatrixBase
• scalarSubtractInPlace() : MatrixBase
• scalarSum() : MatrixHelper
• scalarTimesEq() : Mat , Row , SymMat , Vec
• scalarTimesEqFromLeft() : Mat , SymMat , Vec
• scaleBy() : MatrixHelper
• ScaleColumns() : DenseGenMatrix , MultiVectorMatrix
• ScaledInfeasibilities() : SolveStatistics
• ScaledMatrix() : ScaledMatrix
• ScaledMatrixSpace() : ScaledMatrixSpace
• scaleMesh() : PolygonalMesh
• ScaleRows() : MultiVectorMatrix
• ScalImpl() : CompoundVector , DenseVector , Vector
• Scandium() : Element::Scandium
• Screw() : MobilizedBody::Screw
• Seaborgium() : Element::Seaborgium
• Selenium() : Element::Selenium
• sendCoordinates() : VmdConnection
• Serine() : AminoAcidResidue::Serine
• SerineC() : Biotype
• SerineCA() : Biotype
• SerineCB() : Biotype
• SerineHA() : Biotype
• SerineHB() : Biotype
• SerineHG() : Biotype
• SerineHN() : Biotype
• SerineN() : Biotype
• SerineO() : Biotype
• SerineOG() : Biotype
• Set() : Vector
• set() : ValueHelper , Transform
• Set_bound_mult() : IteratesVector
• Set_bound_mult_NonConst() : IteratesVector
• set_delta() : IpoptData
• set_delta_aff() : IpoptData
• Set_eq_mult() : IteratesVector
• Set_eq_mult_NonConst() : IteratesVector
• Set_info_alpha_dual() : IpoptData
• Set_info_alpha_primal() : IpoptData
• Set_info_alpha_primal_char() : IpoptData
• Set_info_ls_count() : IpoptData
• Set_info_regu_x() : IpoptData
• Set_info_skip_output() : IpoptData
• Set_iter_count() : IpoptData
• Set_mu() : IpoptData
• Set_primal() : IteratesVector
• Set_primal_NonConst() : IteratesVector
• Set_s() : IteratesVector
• Set_s_NonConst() : IteratesVector
• Set_tau() : IpoptData
• Set_tiny_step_flag() : IpoptData
• Set_tol() : IpoptData
• set_trial() : IpoptData
• Set_v_L() : IteratesVector
• Set_v_L_NonConst() : IteratesVector
• Set_v_U() : IteratesVector
• Set_v_U_NonConst() : IteratesVector
• Set_W() : IpoptData
• Set_x() : IteratesVector
• Set_x_NonConst() : IteratesVector
• Set_y_c() : IteratesVector
• Set_y_c_NonConst() : IteratesVector
• Set_y_d() : IteratesVector
• Set_y_d_NonConst() : IteratesVector
• Set_z_L() : IteratesVector
• Set_z_L_NonConst() : IteratesVector
• Set_z_U() : IteratesVector
• Set_z_U_NonConst() : IteratesVector
• setAbsoluteTolerance() : Integrator , MechanicalDAEIntegrator
• setAccuracy() : Integrator , MechanicalDAEIntegrator
• setAdvancedBoolOption() : Optimizer
• setAdvancedIntOption() : Optimizer
• setAdvancedRealOption() : Optimizer
• setAdvancedStrOption() : Optimizer
• setAllGlobalScaleFactors() : DuMMForceFieldSubsystem
• setAllowInterpolation() : Integrator
• setAllParticleLocations() : SimbodyMatterSubsystem
• setAllParticleMasses() : SimbodyMatterSubsystem
• setAllParticleVelocities() : SimbodyMatterSubsystem
• SetAllPrintLevels() : Journal
• setAmberImproperTorsionGlobalScaleFactor() : DuMMForceFieldSubsystem
• setAmberLikeParameters() : Propane , LithiumIon , SodiumIon , PotassiumIon , RubidiumIon , CesiumIon , MagnesiumIon , CalciumIon , ZincIon , ChlorideIon
• setAngle() : MobilizedBody::Pin , MobilizedBody::Planar
• setAtomBiotype() : Compound
• setAtomClassVdwParameters() : DuMMForceFieldSubsystem
• setAtomClassVdwParameters_KA() : DuMMForceFieldSubsystem
• setAxisDisplayLength() : Constraint::ConstantAngle , Constraint::Weld
• setAxisDisplayWidth() : Constraint::ConstantAngle
• setAxisLength() : DecorativeFrame
• setBaseAtom() : Compound
• setBaseCompound() : Compound
• setBiotypeChargedAtomType() : DuMMForceFieldSubsystem
• setBiotypeIndex() : Compound
• SetBlockCols() : CompoundMatrixSpace
• SetBlockDim() : CompoundSymMatrixSpace
• SetBlockRows() : CompoundMatrixSpace
• setBody() : MobilizedBody
• setBodyId() : DecorativeGeometry , DecorativeLine
• setBodyParameters() : ElasticFoundationForce , HuntCrossleyForce
• setBondBendGlobalScaleFactor() : DuMMForceFieldSubsystem
• setBondMobility() : Compound
• setBondStretchGlobalScaleFactor() : DuMMForceFieldSubsystem
• setBondTorsionGlobalScaleFactor() : DuMMForceFieldSubsystem
• setCameraClippingRange() : VTKVisualizer
• setCameraFocalPoint() : VTKVisualizer
• setCameraLocation() : VTKVisualizer
• setCameraUpDirection() : VTKVisualizer
• setChargedAtomTypeCharge() : DuMMForceFieldSubsystem
• setChargedAtomTypeCharge_KA() : DuMMForceFieldSubsystem
• setColor() : DecorativeGeometry , DecorativeLine
• SetComp() : CompoundMatrix , CompoundSymMatrix , CompoundVector
• SetCompNonConst() : CompoundMatrix , CompoundSymMatrix , CompoundVector
• setCompoundBondMobility() : Compound
• setCompoundName() : Compound
• setCompoundSystem() : Compound
• SetCompSpace() : CompoundMatrixSpace , CompoundSymMatrixSpace , CompoundVectorSpace , IteratesVectorSpace
• setConstraintIsDisabled() : SimbodyMatterSubsystem
• setConstraintTolerance() : Integrator , MechanicalDAEIntegrator
• setContactSubsystem() : MultibodySystem
• setConvergenceTolerance() : Optimizer
• setCoulomb12ScaleFactor() : DuMMForceFieldSubsystem
• setCoulomb13ScaleFactor() : DuMMForceFieldSubsystem
• setCoulomb14ScaleFactor() : DuMMForceFieldSubsystem
• setCoulomb15ScaleFactor() : DuMMForceFieldSubsystem
• setCoulombGlobalScaleFactor() : DuMMForceFieldSubsystem
• setDecorationSubsystem() : MultibodySystem
• setDefaultAngle() : Constraint::ConstantAngle , MobilizedBody::Pin , MobilizedBody::Planar
• setDefaultBaseAxis() : Constraint::ConstantAngle
• setDefaultBaseRotation() : Constraint::ConstantOrientation
• setDefaultBondAngle() : Compound
• setDefaultBondLength() : Compound
• setDefaultContactPoint() : Constraint::NoSlip1D
• setDefaultDihedralAngle() : Compound
• setDefaultDirection() : Constraint::NoSlip1D
• setDefaultDownPucker() : AminoAcidResidue::Proline
• setDefaultFollowerAxis() : Constraint::ConstantAngle
• setDefaultFollowerPoint() : Constraint::PointInPlane , Constraint::PointOnLine
• setDefaultFollowerRotation() : Constraint::ConstantOrientation
• setDefaultFrameOnBody1() : Constraint::Weld
• setDefaultFrameOnBody2() : Constraint::Weld
• setDefaultInboardBondLength() : Compound
• setDefaultInboardDihedralAngle() : Compound
• setDefaultInboardFrame() : MobilizedBody , MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Universal , MobilizedBody::Cylinder , MobilizedBody::BendStretch , MobilizedBody::Planar , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Ellipsoid , MobilizedBody::Translation , MobilizedBody::Free , MobilizedBody::LineOrientation , MobilizedBody::FreeLine , MobilizedBody::Weld
• SetDefaultInteger() : RegisteredOption
• setDefaultLength() : MobilizedBody::Slider
• setDefaultLineDirection() : Constraint::PointOnLine
• setDefaultMassProperties() : MobilizedBody
• setDefaultMethod() : Differentiator
• SetDefaultNumber() : RegisteredOption
• setDefaultNumConstraintEquations() : Constraint::Custom::Implementation
• setDefaultOutboardFrame() : MobilizedBody , MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Universal , MobilizedBody::Cylinder , MobilizedBody::BendStretch , MobilizedBody::Planar , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Ellipsoid , MobilizedBody::Translation , MobilizedBody::Free , MobilizedBody::LineOrientation , MobilizedBody::FreeLine , MobilizedBody::Weld
• setDefaultPhiAngle() : AminoAcidResidue
• setDefaultPitch() : MobilizedBody::Screw
• setDefaultPlaneHeight() : Constraint::PointInPlane
• setDefaultPlaneNormal() : Constraint::PointInPlane
• setDefaultPointOnBody1() : Constraint::Rod , Constraint::Ball
• setDefaultPointOnBody2() : Constraint::Rod , Constraint::Ball
• setDefaultPointOnLine() : Constraint::PointOnLine
• setDefaultPsiAngle() : AminoAcidResidue
• setDefaultQ() : MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Planar , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Ellipsoid , MobilizedBody::Translation , MobilizedBody::Free
• setDefaultQuaternion() : MobilizedBody::Free
• setDefaultRadii() : MobilizedBody::Ellipsoid
• setDefaultRadius() : Constraint::Ball , MobilizedBody::Gimbal , MobilizedBody::Ball
• setDefaultRigidBodyMassProperties() : Body , Body::Rigid , Body::Linear
• setDefaultRodLength() : Constraint::Rod
• setDefaultRotation() : MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Ellipsoid , MobilizedBody::Free
• SetDefaultString() : RegisteredOption
• setDefaultTorsionAngle() : Ethane
• setDefaultTransform() : MobilizedBody::Free
• setDefaultTranslation() : MobilizedBody::Planar , MobilizedBody::Translation , MobilizedBody::Free
• setDefaultUpPucker() : AminoAcidResidue::Proline
• SetDiag() : DiagMatrix , LowRankUpdateSymMatrix
• setDiagnosticsLevel() : Optimizer
• setDifferentiatorMethod() : Optimizer
• setDihedralAngle() : Compound
• setDirectionDisplayLength() : Constraint::NoSlip1D
• setDisabledByDefault() : Constraint , Constraint::Custom::Implementation
• setDiscreteVariable() : State
• setDuMMAtomIndex() : Compound
• setEndpoints() : DecorativeLine
• setErrFile() : CPodes
• setErrHandlerFn() : CPodes
• setEstimatedAccuracy() : Differentiator::Function
• setEventId() : System::EventTriggerInfo
• setEventInterval() : PeriodicEventHandler , PeriodicEventReporter
• setEventTriggered() : EventStatus
• setEwtFn() : CPodes
• setFaceCamera() : DecorativeGeometry
• SetFactor() : IdentityMatrix
• setFinalTime() : Integrator
• setFixedStepSize() : Integrator
• SetFreeMuMode() : IpoptData
• setGbsaGlobalScaleFactor() : DuMMForceFieldSubsystem
• setGbsaIncludeAceApproximation() : DuMMForceFieldSubsystem
• setGbsaIncludeAceApproximationOff() : DuMMForceFieldSubsystem
• setGbsaIncludeAceApproximationOn() : DuMMForceFieldSubsystem
• setGravity() : Force::UniformGravity
• setHalfHeight() : DecorativeCylinder
• setHalfLengths() : DecorativeBrick
• setHasTimeAdvancedEvents() : System::Guts
• SetHaveAffineDeltas() : IpoptData
• SetHaveDeltas() : IpoptData
• SetImpl() : CompoundVector , DenseVector , Vector
• setImpl() : PIMPLHandle
• setInboardBondCenter() : Compound
• setInboardFrame() : MobilizedBody
• setInertia() : Inertia
• SetInitialIterates() : DefaultIterateInitializer , IterateInitializer , RestoIterateInitializer , WarmStartIterateInitializer
• setInitialStepSize() : Integrator , MechanicalDAEIntegrator
• setInitStep() : CPodes
• SetIntegerValue() : OptionsList
• setIntegrator() : TimeStepper
• setInternalStepLimit() : Integrator
• SetJournalist() : OptionsList
• setLength() : MobilizedBody::Slider
• setLimitedMemoryHistory() : Optimizer
• setLineDisplayHalfLength() : Constraint::PointOnLine
• setLineThickness() : DecorativeGeometry , DecorativeLine
• SetLongDescription() : RegisteredOption
• SetLowerInteger() : RegisteredOption
• SetLowerNumber() : RegisteredOption
• setMassProperties() : MassProperties
• setMatrixCondition() : MatrixBase , MatrixHelper
• setMatrixShape() : MatrixBase , MatrixHelper
• setMatrixSparsity() : MatrixBase , MatrixHelper
• setMatrixStorage() : MatrixBase , MatrixHelper
• setMatrixStructure() : MatrixBase , MatrixHelper
• setMatterSubsystem() : MultibodySystem
• setMax() : Random::Uniform
• setMaxConvFails() : CPodes
• setMaxErrTestFails() : CPodes
• setMaxHnilWarns() : CPodes
• setMaximumStepSize() : Integrator , MechanicalDAEIntegrator
• setMaxIterations() : Optimizer
• setMaxNonlinIters() : CPodes
• setMaxNumSteps() : CPodes
• setMaxOrd() : CPodes
• setMaxStep() : CPodes
• setMean() : Random::Gaussian
• setMessage() : Base
• setMin() : Random::Uniform
• setMinimumStepSize() : Integrator , MechanicalDAEIntegrator
• setMinStep() : CPodes
• setMobilizerIsPrescribed() : SimbodyMatterSubsystem
• setMobilizerTranslation() : MobilizedBody::Translation
• setMobilizerVelocity() : MobilizedBody::Translation
• setMolecularMechanicsForceSubsystem() : MolecularMechanicsSystem
• setMyHandle() : ContactGeometryImpl
• SetName() : RegisteredOption
• setNFunctions() : Differentiator::Function
• setNonlinConvCoef() : CPodes
• setNParameters() : Differentiator::Function
• setNSubsystems() : State
• setNumEqualityConstraints() : OptimizerSystem
• SetNumericValue() : OptionsList
• setNumInequalityConstraints() : OptimizerSystem
• setNumLinearEqualityConstraints() : OptimizerSystem
• setNumLinearInequalityConstraints() : OptimizerSystem
• setNumParameters() : OptimizerSystem
• setOneLetterCode() : BiopolymerResidue
• setOneQ() : MobilizedBody
• setOneU() : MobilizedBody
• setOpacity() : DecorativeGeometry , DecorativeLine
• setOptimizerSystem() : Optimizer
• setOrderLimit() : CPodesIntegrator
• SetOrigFilterLSAcceptor() : RestoFilterConvergenceCheck
• setOutboardFrame() : MobilizedBody
• setOwnerHandle() : PIMPLImplementation , Study::Guts , System::Guts
• setOwnerSubsystemHandle() : Subsystem::Guts
• setParameterLimits() : OptimizerSystem
• setParticleLocation() : SimbodyMatterSubsystem
• setParticleVelocity() : SimbodyMatterSubsystem
• setPdbChainId() : Compound
• setPdbResidueName() : Compound
• setPdbResidueNumber() : Compound
• setPlaneDisplayHalfWidth() : Constraint::PointInPlane
• setPoint1() : DecorativeLine
• setPoint2() : DecorativeLine
• setPointDisplayRadius() : Constraint::NoSlip1D , Constraint::PointInPlane , Constraint::PointOnLine
• SetPrintLevel() : Journal
• setProjectEveryStep() : Integrator , MechanicalDAEIntegrator
• setProjectInterpolatedStates() : Integrator
• setProjFrequency() : CPodes
• setProjLsetupFreq() : CPodes
• setProjNonlinConvCoef() : CPodes
• setProjTestCnstr() : CPodes
• setProjUpdateErrEst() : CPodes
• setQ() : MobilizedBody::Free , MobilizedBody::Planar , State , Subsystem , Subsystem::Guts , MobilizedBody::Pin , MobilizedBody::Slider , MobilizedBody::Screw , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::Translation
• setQFromVector() : MobilizedBody
• setQToFitRotation() : MobilizedBody
• setQToFitTransform() : MobilizedBody::Custom::Implementation , MobilizedBody
• setQToFitTranslation() : MobilizedBody
• setQuadErrCon() : CPodes
• setQuaternionFromAngleAxis() : Quaternion
• setQuaternionToNaN() : Quaternion
• setQuaternionToZeroRotation() : Quaternion
• setRadii() : DecorativeEllipsoid
• setRadius() : ContactGeometry::SphereImpl , DecorativeCircle , DecorativeSphere , DecorativeCylinder , ContactGeometry::Sphere
• setRate() : MobilizedBody::Pin , MobilizedBody::Slider
• setReciprocalConditionNumber() : FactorQTZ
• SetRegisteredOptions() : OptionsList
• SetRegisteringCategory() : RegisteredOption , RegisteredOptions
• setRelativeTolerance() : Integrator , MechanicalDAEIntegrator
• setRep() : Subsystem::Guts , Body
• setReportAllSignificantStates() : TimeStepper
• setRepresentation() : DecorativeLine , DecorativeGeometry
• setRequiredLocalizationTimeWindow() : System::EventTriggerInfo
• setResidueName() : BiopolymerResidue
• setResolution() : DecorativeLine , DecorativeGeometry
• setReturnEveryInternalStep() : Integrator
• SetRigorousLineSearch() : BacktrackingLineSearch , LineSearch
• setRNABondMobility() : RNA
• setRootDirection() : CPodes
• setRotationColFromUnitVecTrustMe() : Rotation
• setRotationFromAngleAboutAxis() : Rotation
• setRotationFromAngleAboutNonUnitVector() : Rotation
• setRotationFromAngleAboutUnitVector() : Rotation
• setRotationFromAngleAboutX() : Rotation
• setRotationFromAngleAboutY() : Rotation
• setRotationFromAngleAboutZ() : Rotation
• setRotationFromApproximateMat33() : Rotation
• setRotationFromMat33TrustMe() : Rotation
• setRotationFromOneAxis() : Rotation
• setRotationFromQuaternion() : Rotation
• setRotationFromThreeAnglesThreeAxes() : Rotation
• setRotationFromTwoAnglesTwoAxes() : Rotation
• setRotationFromTwoAxes() : Rotation
• setRotationFromUnitVecsTrustMe() : Rotation
• setRotationToBodyFixedXY() : Rotation
• setRotationToBodyFixedXYZ() : Rotation
• setRotationToIdentityMatrix() : Rotation
• setRotationToNaN() : Rotation
• setScale() : DecorativeGeometry , DecorativeLine
• setSeed() : Random
• SetShortDescription() : RegisteredOption
• setShowDefaultGeometry() : SimbodyMatterSubsystem
• setSimbodyMatterSubsystem() : SimbodyMatterSubtree
• setStabLimDet() : CPodes
• setStdDev() : Random::Gaussian
• setStopTime() : CPodes , MechanicalDAEIntegrator
• SetStringValue() : OptionsList
• setSystem() : Subsystem , Subsystem::Guts
• setT() : Transform , InverseTransform
• setTemperature() : VelocityRescalingThermostat
• SetTerm() : SumMatrix , SumSymMatrix
• SetTermSpace() : SumMatrixSpace , SumSymMatrixSpace
• setText() : DecorativeText
• setThreeLetterCode() : BiopolymerResidue
• setTime() : State , MyObjectiveFunc , MyVectorFunc , MyObjectiveFunc , MyVectorFunc
• setTinkerBiotypeIndex() : Biotype
• setTInv() : Transform , InverseTransform
• setTo() : MatrixBase
• setTolerances() : CPodes
• setToNaN() : MatrixBase , PhiMatrix , Transform , Row , SymMat , Vec , Mat
• setTopLevelTransform() : Compound
• setToZero() : MatrixBase , PhiMatrix , Transform
• setTransform() : DecorativeGeometry , DecorativeLine , AnalyticGeometry
• setTransitionVelocity() : ElasticFoundationForce , HuntCrossleyForce
• setTranslation() : MobilizedBody::Planar
• SetTrialBoundMultipliersFromStep() : IpoptData
• SetTrialEqMultipliersFromStep() : IpoptData
• SetTrialPrimalVariablesFromStep() : IpoptData
• setTriggerOnFallingSignTransition() : System::EventTriggerInfo
• setTriggerOnRisingSignTransition() : System::EventTriggerInfo
• SetType() : RegisteredOption
• SetU() : LowRankUpdateSymMatrix
• setU() : MobilizedBody::Translation , MobilizedBody::Screw , MobilizedBody::Pin , Subsystem::Guts , MobilizedBody::Planar , State , Subsystem , MobilizedBody::Slider , MobilizedBody::Ball , MobilizedBody::Free , MobilizedBody::Gimbal
• setUFromVector() : MobilizedBody
• SetUnscaledMatrix() : SymScaledMatrix , ScaledMatrix
• SetUnscaledMatrixNonConst() : SymScaledMatrix , ScaledMatrix
• SetUpperInteger() : RegisteredOption
• SetUpperNumber() : RegisteredOption
• setUseCPodesProjection() : CPodesIntegrator
• setUseEulerAngles() : SimbodyMatterSubsystem
• setUseMultithreadedComputation() : DuMMForceFieldSubsystem
• setUToFitAngularVelocity() : MobilizedBody
• setUToFitLinearVelocity() : MobilizedBody
• setUToFitVelocity() : MobilizedBody::Custom::Implementation , MobilizedBody
• SetV() : LowRankUpdateSymMatrix
• SetValues() : DenseVector , SymTMatrix , GenTMatrix
• setVdw12ScaleFactor() : DuMMForceFieldSubsystem
• setVdw13ScaleFactor() : DuMMForceFieldSubsystem
• setVdw14ScaleFactor() : DuMMForceFieldSubsystem
• setVdw15ScaleFactor() : DuMMForceFieldSubsystem
• setVdwGlobalScaleFactor() : DuMMForceFieldSubsystem
• setVdwMixingRule() : DuMMForceFieldSubsystem
• SetVector() : MultiVectorMatrix
• SetVectorNonConst() : MultiVectorMatrix
• setVelocityConstraintRescale() : MechanicalDAEIntegrator
• setY() : State
• setZ() : Subsystem , Subsystem::Guts , State
• setZeroHeight() : Force::UniformGravity
• shiftBaseStationToFrame() : InverseTransform , Transform
• shiftFrameStationToBase() : Transform , InverseTransform
• shiftFromMassCenter() : Inertia
• shiftToMassCenter() : Inertia
• ShortDescription() : RegisteredOption
• shouldTriggerOnFallingSignTransition() : System::EventTriggerInfo
• shouldTriggerOnRisingSignTransition() : System::EventTriggerInfo
• Silicon() : Element::Silicon
• Silver() : Element::Silver
• SimbodyMatterSubsystem() : SimbodyMatterSubsystem
• SimbodyMatterSubtree() : SimbodyMatterSubtree
• SimbodyMatterSubtreeResults() : SimbodyMatterSubtreeResults
• SimTK_DEFINE_UNIQUE_LOCAL_INDEX_TYPE() : Compound
• SimTK_DOWNCAST() : ValueHelper , ForceSubsystem::Guts
• SimTK_DOWNCAST2() : Value
• SimTK_INSERT_DERIVED_HANDLE_DECLARATIONS() : MobilizedBody::Planar , MobilizedBody::Ellipsoid , ElasticFoundationForce , Force::TwoPointLinearSpring , HuntCrossleyForce , Constraint::PointInPlane , Constraint::ConstantAngle , Constraint::ConstantOrientation , Constraint::Custom , Force::TwoPointConstantForce , Force::ConstantForce , Biopolymer , Force::Custom , MobilizedBody::Screw , MobilizedBody::Universal , MobilizedBody::Cylinder , MobilizedBody::Pin , MobilizedBody::Translation , MobilizedBody::Ground , MobilizedBody::Weld , BiopolymerResidue , MobilizedBody::FreeLine , MobilizedBody::Free , MobilizedBody::LineOrientation , MobilizedBody::Slider , MobilizedBody::Gimbal , MobilizedBody::Ball , MobilizedBody::BendStretch , Constraint::NoSlip1D , Force::MobilityConstantForce , Force::UniformGravity , MobilizedBody::Custom , Force::ConstantTorque , Force::GlobalDamper , Constraint::ConstantSpeed , Force::MobilityLinearSpring , Force::MobilityLinearDamper , Force::TwoPointLinearDamper , Constraint::Rod , Constraint::Weld , Constraint::Ball , Constraint::PointOnLine , Molecule
• SingleAtom() : Compound::SingleAtom
• SingularMatrix() : SingularMatrix
• SinOmegaX() : SinOmegaX
• SinusoidFunction() : SinusoidFunction
• SinvBlrmZMTdBr() : Matrix
• SinvBlrmZMTdBrImpl() : ScaledMatrix , Matrix , CompoundMatrix , ExpansionMatrix
• size() : Enumeration , MatrixBase , ArrayHelper , ArrayBase , EnumerationSet::EnumerationSetRep , StableArray , RowVectorBase , VectorBase , SymMat , Mat , Vec , MatrixHelper , EnumerationSet , Row
• SizeOutOfRange() : SizeOutOfRange
• SizeWasNegative() : SizeWasNegative
• Slider() : MobilizedBody::Slider
• SmartPtr() : SmartPtr
• Sodium() : Element::Sodium
• SodiumIon() : SodiumIon
• solve() : FactorSVD , FactorQTZ , Factor , FactorLU , Factor , FactorQTZ
• Solve() : PDSystemSolver
• solve() : FactorLU , FactorSVD
• Solve() : AugSystemSolver , AugRestoSystemSolver , LowRankAugSystemSolver , PDFullSpaceSolver , SymLinearSolver
• SolveStatistics() : SolveStatistics
• SparseSymLinearSolverInterface() : SparseSymLinearSolverInterface
• SpecialAddForLMSR1() : DenseSymMatrix
• SpeedCoupler() : Constraint::SpeedCoupler
• Sphere() : ContactGeometry::Sphere
• sphere() : Inertia
• SphereImpl() : ContactGeometry::SphereImpl
• splder() : GCVSPLUtil
• Spline() : Spline
• SplineFitter() : SplineFitter
• SplineFitterImpl() : SplineFitter::SplineFitterImpl
• SplineImpl() : Spline::SplineImpl
• StableArray() : StableArray
• StageIsWrong() : StageIsWrong
• StageOutOfRange() : StageOutOfRange
• StageTooHigh() : StageTooHigh
• StageTooLow() : StageTooLow
• standardize() : Vec , Row , MatrixBase , CNT , Mat , NTraits< complex< R > > , SymMat , NTraits< conjugate< R > > , negator
• StandardScalingBase() : StandardScalingBase
• Start() : TimedTask
• StartWatchDog() : FilterLSAcceptor , BacktrackingLSAcceptor
• State() : State
• Statistics() : IpoptApplication
• StdAugSystemSolver() : StdAugSystemSolver
• StdInterfaceTNLP() : StdInterfaceTNLP
• step() : CPodes , OLDCPodesIntegrator , OLDRungeKuttaMerson , OLDExplicitEuler , MechanicalDAEIntegrator
• stepBy() : Integrator
• stepTo() : Integrator , TimeStepper
• StopWatchDog() : FilterLSAcceptor , BacktrackingLSAcceptor
• String() : String
• Strontium() : Element::Strontium
• Study() : Study
• subIn() : MatrixHelper
• Subject() : Subject
• Subsystem() : Subsystem
• subsystemTopologyHasBeenRealized() : Subsystem , Subsystem::Guts
• successfulStepStatusString() : Integrator
• Sulfur() : Element::Sulfur
• sum() : VectorBase , SymMat , Mat , Row , MatrixBase , RowVectorBase , Vec , MatrixHelper
• Sum() : Vector
• SumImpl() : DenseVector , Vector , CompoundVector
• SumLogs() : Vector
• SumLogsImpl() : Vector , DenseVector , CompoundVector
• SumMatrix() : SumMatrix
• SumMatrixSpace() : SumMatrixSpace
• SumSymMatrix() : SumSymMatrix
• SumSymMatrixSpace() : SumSymMatrixSpace
• superpose() : Kabsch78
• swapOwnedContiguousData() : MatrixHelper
• swapOwnedContiguousScalarData() : MatrixBase
• SymLinearSolver() : SymLinearSolver
• SymMat() : SymMat
• SymMatrix() : SymMatrix
• SymMatrixSpace() : SymMatrixSpace
• SymScaledMatrix() : SymScaledMatrix
• SymScaledMatrixSpace() : SymScaledMatrixSpace
• SymTMatrix() : SymTMatrix
• SymTMatrixSpace() : SymTMatrixSpace
• systemTopologyHasBeenRealized() : System::Guts